Tritonibacter scottomollicae: R1T40_04180
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Entry
R1T40_04180 CDS
T09466
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tsco
Tritonibacter scottomollicae
Pathway
tsco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R1T40_04180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsco03019
]
R1T40_04180
Enzymes [BR:
tsco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R1T40_04180
Messenger RNA biogenesis [BR:
tsco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R1T40_04180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
Utp25_C
SUa-2TM
ERCC3_RAD25_C
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WOI33948
UniProt:
A0ABZ0HI99
LinkDB
All DBs
Position
complement(757884..759218)
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AA seq
444 aa
AA seq
DB search
MTEFSTMDLPKHLHTRIEAMGFHTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPL
IAQMLEYGRKPAAGTVRGLILAPTRELANQIAETLKGLTEGSPLKTGLVVGGVSINPQIT
RLSRGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIASLLPEK
RQTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAKAEKLGLLKELL
TAHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLV
ATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKEGQAVAFCAPDEIGDLKAI
QKTMSITIPVASGRAWEEMPDPAAKSSRGGGRGRPGGGGGRGKPGGKPGAGRRRFGGGGK
SEGQGGGGEARAAGGGAGRQRRKS
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattttccaccatggacctgcccaagcacctgcacacccggatcgaagccatg
ggctttcacactccgacgccgatccaggcgcgggcgatcccgcatgcgctgaacggacag
gacgtgctgggtctggcgcagaccggtaccggcaagaccgccgcctttggcgtaccgctg
atcgcccagatgctggaatatggccgcaagcctgctgccggtacggtgcgcgggctgatc
ctggccccgacccgcgagctggccaaccagatcgccgagaccctgaagggtctgaccgag
ggcagcccgctgaaaaccggcctggtggtcggtggtgtttccatcaacccgcagatcacc
cgcctgtcgcgcggcaccgatatcctcgtcgcaacgccgggccgcctgctcgacatcctc
gaccgcaaggcgctggatctcggctcttgcgatttcctggtgctggacgaggccgaccag
atgctggatctcggcttcatccacgccctgcgcaagatcgcctccctgctgcccgaaaag
cgccagaccatgctgttctcggccactatgcccaagcagatgaacgagatcgccaacgcc
tacctcaagagcccggtgcgcatcgaggtgacccctcccggcaagcctgccgccaaagtc
acccaatcggtgcatttcatcgccaaagcggaaaagctgggccttctgaaagagctgctg
accgcccatgacggcgaacgcacgctggtctttggccgcaccaaacatggcatggaaaag
ctgatgaaggtgctggacaaggccggcttcaaggccgcagccatccacggcaacaaaagc
cagggccagcgcgaacgggcgctgaaagccttcaaatccggcgagatcaccgtgctggtg
gccaccgatgtggcggcgcgcgggctggatattccggatgtgaaatacgtctacaactac
gagctgccgaatgtgccggatgcctatgtgcaccgcattggccgcaccgcgcgtgcgggc
aaggaaggtcaggccgtggccttctgcgccccggatgagatcggcgatctgaaggcgatc
cagaaaaccatgagcatcaccatccccgtagcctctggccgcgcctgggaagagatgccc
gatcccgccgccaaatcctcgcgcggtggcggtcgtggtcgccccggtggcggtggcggt
cgtggcaaacccggtggcaagccgggcgccgggcgtcgtcgctttggcggtggtggtaaa
tccgaaggtcagggtggcggcggcgaagcccgcgcagccggcggcggcgcaggccgtcag
cgccggaagtcctga
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