Tritonibacter scottomollicae: R1T40_04650
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Entry
R1T40_04650 CDS
T09466
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tsco
Tritonibacter scottomollicae
Pathway
tsco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R1T40_04650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsco03019
]
R1T40_04650
03009 Ribosome biogenesis [BR:
tsco03009
]
R1T40_04650
Enzymes [BR:
tsco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
R1T40_04650
Messenger RNA biogenesis [BR:
tsco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R1T40_04650
Ribosome biogenesis [BR:
tsco03009
]
Prokaryotic type
rRNA processing factors
R1T40_04650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WOI34029
UniProt:
A0ABZ0HJ53
LinkDB
All DBs
Position
858140..860977
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AA seq
945 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEALRARDEEDDEPKPKKRSRSRS
KTRAERSKTTDVVETREPAASNGEISGMETIDLTDEQVDLTDVPEATSPMETVAETPVEE
PQQDTAATDASDDGDLASDVASAEDADDVEGDDAADDKSEDTSKSANAADKDDSIESVAD
DDDHEDIRPPRKPRPKRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM
PNTARGGGISRKITNAVDRKKLKEIAAELDVPKGAGLIVRTAGAKRTKAEIKRDYEYLQR
MWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMP
SHAKNVKNYQDQMPLFARYQVETYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRAT
KEASIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTD
RARIQVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEE
GTRRRSREVLVKCPVDIANYLMNQKREHIAQIEARYGLSVRIEGDVTLVSPDFTLEKFKT
ASRAIPVVSSPVVSVDASIMDQIDAIEEPEEEVEVAPAPVEAEVESEARSEESEGEAKPK
RKRRRRRRKKSGNGENGHESGENSSANGDTSEAAKEANAQDEANTTADPAADGEPEADAE
PKKKRTRTRTRSRTRKKVEAEADQPVAADAPATAEADRAEAPAAATEVTPSVAAAPEVAA
EVEAQDAPVAAAPATAPEPTPAPEPQKAPEPTASEVPTQEAPAEQATAPEVTSEAQPAPA
APQAEDAPVAAAPTVAETKPEPVAAQPEPAQSQKPKRRGWWSAGS
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaaatgctgatcgacgccacccacgcggaagaaacccgcgtcgtggtggtg
gatggaaacaaagttgaggagttcgactttgaatctgaaaacaaacgccagcttgctggc
aatatctacctcgcaaaagtaacccgcgtcgaaccatcgctgcaggcggcttttgtggac
tatggcggcaatcgccatggtttccttgccttttcggaaatccacccggattattatcag
atccccgttgcggatcgtgaagctctgatggaagaggaacgcgcttacgccgaggctctg
cgcgcccgcgacgaagaggacgacgaaccgaagccgaagaaacgctcccggtcgcgcagc
aagacccgcgcggaacggtcgaagacgacagatgtggtggaaacccgcgagcccgcggcg
tccaacggtgaaatctccggaatggagaccatcgacctcactgatgagcaggttgatctg
acggatgtaccagaggcgacatcgccgatggaaaccgtggcagagaccccggtcgaagag
cctcagcaagacacagccgcgacggatgcctccgacgacggtgatctggcgtcggatgtt
gcatccgctgaggatgcagatgatgtcgaaggcgatgacgctgcggacgacaaatccgaa
gacacatccaagtctgcaaatgccgctgacaaggatgacagcatcgagtcggttgccgat
gatgatgatcacgaagacatccgcccgccgcgcaagccgcgtcccaagcgctacaagatc
caggaagtcatcaaggtccgtcaggttcttctggttcaggtcgtcaaggaagagcgcggc
aacaaaggcgcggcgctgaccacatatctgtcgctggccggtcgctactgcgtcctgatg
cccaataccgcgcgtggcggtggcatctctcgcaagatcaccaacgccgtcgaccgcaag
aagctgaaagagatcgctgccgagctggacgtgcccaagggcgcgggcctgatcgtgcgc
accgccggagccaagcgcaccaaggcggagatcaagcgagactatgaatacctgcagcgc
atgtgggagcagatccgcgagctgacgttgaaatccatcgcgccggccaagatctatgaa
gagggcgacctgatcaaacgctcgatccgcgatctttacaaccgcgagatcgacgaggtt
ctggtggaaggcgaacgcggctaccgtatcgccaaggacttcatgaaaatgatcatgccg
tcccacgccaagaatgtgaaaaactaccaggatcagatgccgctgtttgcacgctatcag
gtcgaaacctaccttggcggcatgttcaacccgaccgtgcagctgaaatccggcggctac
atcgtgatcggtgtgaccgaggcgctggtggcgatcgacgtgaactccggccgggccaca
aaagaggcttcgatcgaggataccgcgctcaagaccaaccttgaggccgccgaagaggtg
gcacgtcagctgcgtctgcgcgaccttgccggtctgatcgtcatcgacttcatcgacatg
gacgagcgcaagaacaacgccgccgtcgaaaagcgtatgaaagacaagctgaagactgat
cgcgcccgtattcaggtgggtcgtatctcgggctttggtctgatggaaatgtcgcgccag
cgtctgcgtcccggcatgatcgaggcaacgacggcgccttgcccgcattgccatggcacc
ggtcttatccgctccgacgactccatggcgctgtcgatcctgcgtcagatcgaggaagag
ggcacccgccgtcgatcccgtgaagtgctggtgaaatgccctgtggacatcgccaactac
ctgatgaaccagaagcgcgagcatatcgcccagatcgaggcccgctacggtctgtcggtt
cggatcgaaggggacgtgacgctggtcagccctgatttcacgcttgagaagttcaagacc
gcctcgcgcgccattccggtggtgtccagccccgtcgtgtcagtcgatgcgtccatcatg
gatcagatcgacgcgattgaagagccggaggaagaggtcgaggttgcgcctgcgccggtc
gaggctgaggtcgaatccgaggctcggtccgaagagagcgaaggcgaagccaaacccaag
cggaagcgtcggcgtcgtcgtcggaaaaaatccggcaatggtgagaacggtcatgagagc
ggtgagaacagctctgcgaacggtgacacgtctgaggcggccaaagaggccaacgcgcag
gacgaggccaacacgactgctgatcctgctgccgatggtgagcccgaggccgatgcggaa
ccgaagaaaaagcggacccgcacccggacacgcagccgcacacgcaagaaagtggaggcc
gaggcggatcaacccgtagccgctgatgcccctgcgaccgctgaagctgatcgcgcagag
gcacccgccgccgcaaccgaggtgacgccgagcgttgctgccgcgcctgaagttgcagcc
gaggtcgaagcacaggatgcacccgttgcggcagcgcccgcgacagcacctgagccaaca
cccgcgccagagccgcaaaaagcgcccgagccaaccgcttcggaagtaccgacgcaagag
gcaccggcggagcaggcaacggcacccgaggtcacgtcagaggcgcagcccgccccggcg
gcaccgcaagccgaggacgcaccggttgctgctgcaccaaccgtagccgagacaaagccg
gagccggtcgcggcgcagccagaacctgcccagtcgcaaaaacccaagcgccgtggctgg
tggtctgccggcagctga
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