Tritonibacter scottomollicae: R1T40_05235
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Entry
R1T40_05235 CDS
T09466
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsco
Tritonibacter scottomollicae
Pathway
tsco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R1T40_05235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsco03400
]
R1T40_05235 (mfd)
Enzymes [BR:
tsco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R1T40_05235 (mfd)
DNA repair and recombination proteins [BR:
tsco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R1T40_05235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
AAA_30
Cas3-like_C_2
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WOI34135
LinkDB
All DBs
Position
981280..984735
Genome browser
AA seq
1151 aa
AA seq
DB search
MTQQSVVMGGAPEGFDARLVLREMERSAAPVLHIARDDKRMEAMRSALRFFAPDVPVVVF
PGWDCLPYDRVSPNADISAARMATLAALVHGMPRQFILLTTLNAATQRIPAREVLREAAF
KARVDSRVDEFALRKFLVRMGFTQSPTVMEPGDYAIRGGIIDIFPPGVSGPVRLDFFGDV
LDGARRFDPATQRTTEKLDMVELAPVSEVILDEAAVTRFRQNYRIEFGAAGNDDPLYEAV
SAGRKHQGIEHWLPFFHERLETLFDYMPGAIVTLDDQLTPARVARWDSIADQYETRKIAM
NAKGRMDSVYKPTPPQLLYLDDDAWENQIAQHRAVQFHPLPQASGPGVVDAGGRIGRNFA
PERQQESISLFGALASHIQAKLAQGPVVVASYSEGARERLSGLIEDEGLAETIPVLDGTR
IGKSGLHLAVWALEHGFEAPDMTVISEQDVLGDRLIRKPKKRRKAENFLTEAQSLSPGDL
VVHVDHGIGRYIGLEVVTAAGAAHECLLLEYAEQSKLYLPVENIELLSKYGHDDGLLDKL
GGGAWQAKKARLKERIREMADRLIRIAAERALRKAPAMDPPPHAWEEFSARFPYQETDDQ
LRAIEDVMGDLHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLARQH
AAGFKERFRGFPLEVRQLSRFVSAKEASQTREGLTKGTVDIVVGTHALLAKSIRFQNLGL
LIIDEEQHFGVAHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLS
IRTYVTEFDAVTVREALLREHYRGGQSFYVVPRISDLPEIEAFLQEQLPELTYVVANGQM
AAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGR
SKTRAYAYLTTKPRQRLTDTAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLEEAIAKIKSGEVEGLVEGDEQWAPQINLGVPVLIPEAYVPDLDVRL
GLYRRLSSLTSKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKKAGISKLDGGPKG
ATIQFHNDKFASPQGLVEFIQAQDGLAKVKDNKIVVRRDWRKDSDKIKGAFAIARDLAEK
VVAAKKKAKNS
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgacccaacaatctgtcgtcatgggcggcgcccccgagggctttgatgcccgtttggtg
ctgcgcgagatggagcgcagcgcggcgccggttctgcacattgcgcgcgatgacaagcgg
atggaggccatgaggtcggcgctgcgcttcttcgcgcctgatgtgccggttgtcgtgttc
cccggatgggattgcctgccatatgaccgggtgtcgccaaatgcagatatctccgccgcg
cggatggccaccttggcggcgctggttcatggcatgccccgacagttcatcctgctgacg
accctgaacgcggcaacgcagagaattcccgcgcgtgaggtactgagagaggcggcgttc
aaggcccgcgtcgacagtcgggtcgatgaatttgcgcttcgtaagtttctggttcgtatg
gggtttacccaaagtccgacggtgatggagcctggcgattatgccattcgcggcggcatc
attgatatcttcccgccgggcgtcagcggaccggtgcgcctggatttctttggtgatgtt
ctggatggtgcgcgccgatttgaccccgcaacccagcgcacgacggaaaagctggatatg
gtcgagctggcaccggtgtccgaggtgatcctcgacgaggcggctgtcacccggttccgg
cagaattaccggatcgagttcggcgcggcgggcaatgatgatccgctctatgaggcggtt
agcgccgggcgcaagcatcaggggatcgagcactggttgccgttttttcacgagcggctg
gagaccttgtttgactatatgccgggggccattgtcacgctggatgatcagctgacaccg
gcgcgagtcgcccgctgggacagcatcgcggatcaatatgagacccgcaagatcgccatg
aatgccaaggggcggatggactcggtttacaaaccaacgccaccgcagcttctgtatctc
gacgatgacgcatgggaaaaccagatcgcgcagcaccgcgctgttcagtttcatcccctg
ccacaggcctccggccctggcgtggttgatgccggggggcgtattgggcgcaatttcgcc
cctgagcgccagcaggaaagtatcagcctgtttggcgcattggccagtcatattcaggcg
aagcttgcccaggggccagtcgttgtcgcgtcctactccgaaggcgcgcgggagcggctg
agcgggttgatcgaagacgaaggccttgcggagaccatcccggttctggacggcacgcgc
attggcaaatcggggctgcatctggcggtctgggcgctggagcatgggttcgaggcgccg
gatatgacggtgatctcggaacaggacgtgctgggtgaccggctgatccgtaagccgaag
aaacgccgcaaggccgagaacttcctgaccgaagcgcaatctctgtcgccgggggatctg
gtggtgcatgtggaccacgggatcgggcgctacatcgggctggaggtcgtgactgcggcc
ggggcggctcatgaatgcttgctgctggaatatgccgagcaatcaaagctctatctgccg
gtcgagaatatcgagctgctgtccaaatatggccatgacgatggtcttctcgacaagctg
ggcggcggtgcctggcaggcgaaaaaggcacgcctgaaggaacgtatccgagagatggcg
gatcggctgatccgcatcgccgcagagcgtgcgttgcgcaaggcgcctgcgatggaccca
ccaccgcacgcgtgggaggagttctctgcgcgcttcccctatcaggaaaccgacgaccag
ttgcgcgcgatcgaggacgtgatgggggatctgcattcgggacagccgatggatcgcctg
atctgtggcgatgtgggctttggcaagaccgaggttgcgatgcgcgcggcctttgtcgcg
gcgatgtcggggctgcaggtggccattgtcgcaccgaccacgcttctggcgcgccagcac
gcagcaggattcaaagagaggttccgtggttttcccttggaagtcaggcagttgtcgcgc
tttgtttcagcgaaggaagccagccagacccgcgaggggctgaccaagggcacggtggac
attgtggtgggcacccatgcgctgctggccaagagcattcgctttcagaacctcggcctg
ctgatcattgatgaagaacagcactttggtgtcgcgcacaaagaacggctcaagcagttg
cgcaccgacattcatgttctcactctgaccgcgacccccattccgcggaccctgcaattg
agcctcacaggtgtccgtgatctttcgatcattggaaccccgccggtggaccgcctgtcg
atccgtacctatgtgaccgagttcgacgccgtgaccgtccgcgaggccttgctgcgtgaa
cattaccggggcgggcagagcttttacgtggtgccgcgcatttcagatctgccggagatc
gaggccttcctgcaggaacagctgcccgagctgacctatgttgtcgccaatggacagatg
gcggcgggtgagctggatgaccgcatgaatgccttctacgacggtaaatacgatgtcctg
ctggccacgacgatcgtcgagtcgggtctcgacattccgaccgcgaataccatggtggtg
caccgcgcggatatgttcggtctggcacagctctatcagataaggggccgggtcggacgg
tccaaaacgcgggcctatgcctatctcaccacgaaaccacgtcagcgcctgacggatacc
gccgagaaacggctgcgggtgcttggctcattggatacactcggtgcaggatttactctt
gcgtcgcaggatctggatatccggggcgcgggcaatctgctgggcgaagaacagtccggt
cagatgcgggatgtggggtatgagctctaccagtcgatgctggaggaggcgattgccaag
atcaaatccggcgaggttgaagggcttgtcgagggcgatgagcagtgggcgccgcagatc
aaccttggtgtgcctgtgttgatcccagaggcctatgtgcccgatcttgatgtgcgtctg
gggctgtatcgccgtctgtcctcgctgaccagcaaggtcgaactggaggggtttgcagcg
gagctgattgacaggtttggtaaattgcccaaagaggtcaataccttgatgcttgttgtt
cggatcaaggcgatgtgcaagaaagctgggatttccaaactggacggtggccccaaaggc
gcaacgatccagttccacaacgacaagtttgcctcgccccaaggtctggttgaattcatc
caggcacaggatgggcttgcgaaggtgaaggacaacaagattgttgtccggcgcgattgg
cgcaaggacagcgacaagatcaaaggcgcctttgccattgcgcgcgatcttgctgaaaag
gtcgtcgccgcgaaaaagaaagccaagaacagctaa
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