Tritonibacter scottomollicae: R1T40_14390
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Entry
R1T40_14390 CDS
T09466
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsco
Tritonibacter scottomollicae
Pathway
tsco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R1T40_14390 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsco03021
]
R1T40_14390 (rpoC)
03400 DNA repair and recombination proteins [BR:
tsco03400
]
R1T40_14390 (rpoC)
Enzymes [BR:
tsco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R1T40_14390 (rpoC)
Transcription machinery [BR:
tsco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R1T40_14390 (rpoC)
DNA repair and recombination proteins [BR:
tsco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R1T40_14390 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Phage_DsbA
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WOI32143
LinkDB
All DBs
Position
complement(2863370..2867605)
Genome browser
AA seq
1411 aa
AA seq
DB search
MNQELTNNPFNPLTPQKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEFMDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEAEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWM
IMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLTLAREGVKGEGMVFGNLDEVHHAL
NAGVVHLHSKVTVRVPQIDEEGNEVFERFETTPGRALLGALLPKNAKAPFELVNRLLRKR
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPESKWTIVDSTRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKLTEAMMSTISAVKKDEDGSDMEPNSVY
MMAHSGARGSVTQMRQLGGMRGLMAKPNGDIIETPVISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREHDCGTERAITAEAAVNDGEVVASIGERILGRV
AADDVKRPGTEEILLAAGQLIDERMADTIEEAGVQSMRIRSPLTCESEEGVCAMCYGRDL
ARGTMVNSGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFENTN
TLTNSSGEVLTVGRNMKLIIQDEHGEERSSHKLGYGTKLFVKEGQSVNRGDKLFEWDPYT
LPIIAEKPGTAKYVDLVNGLAVREETDDATGMTQKIVIDWRAAPKGSDLKPEIILVDADG
EPVRNDLGNPVTYPMSVDAILSAEDGQVIETGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADETMDAVEYMVPKGKHIPVVEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGETTLLKGEHVDKQEFDQANEKALSRGKRPAQGAPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQQVRQVASSRDNVVLEARRI
EAEAAAALAAPMMDEDAGDADFLVETPESRD
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaacaatccgttcaatccgctgaccccgcagaaggtctttgac
gagatcaaggtctctctggcgtcgccggaacgcattttgtcttggtcctacggcgaaatc
aaaaagccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggtctgttctgc
gcgcgtatctttggcccgatcaaagactacgaatgcctgtgcggcaaatataagcgcatg
aaatatcgcggcgtcgtctgcgagaaatgcggtgtggaagtcacgctgcagaaggtccgt
cgcgagcgtatgggccacatcgagctggcctcgccggtcgcgcatatctggttcctgaag
tcgcttccgtcccggatcggcctcatgctggacatgaccctgcgtgatctggaacgtgtt
ctctactttgaaaactacgttgtgatcgaacccggtctgacagatctgacttacggtcag
atgatgaccgaagaagaattcatggacgctcaggatgcctatggcatggacgctttcacc
gccaacatcggtgctgaagcgatccgtgaaatgctggcggcgatcgatctggaagctgaa
gcagagcacctgcgtgccgagctggccgaagccaccggtgagctgaagcccaagaagatc
atcaaacgtctgaaagtcgtggaatccttcctcgagtcgggtaaccgtcccgagtggatg
atcatgaccgtgatcccggtcatcccgccggaactgcggccgctggttccgctggatggt
ggtcgctttgcgacgtccgacctcaacgacctctatcgtcgtgtgatcaaccggaacaac
cgtctgaagcgtctgatcgaactgcgtgcgcctgacatcatcgtccgcaacgaaaagcgg
atgctgcaagagtcggttgacgctctgttcgacaacggccgtcgtggtcgcgtcatcacc
ggtgcaaacaagcgcccgctgaagtcgctctccgacatgttgaaaggtaagcaaggtcgc
ttccgtcagaaccttttgggtaagcgcgtcgacttctccggtcgttcggtcattgtgacc
ggcccggagctgaagctgcaccagtgcggtctgcccaagaagatggcgctcgaactcttc
aagccgttcatctactcgcgtctggaggccaaaggtctgtcctccaccgtgaagcaggcg
aagaagctggtggaaaaagagcgtcccgaagtttgggatatcctcgacgaggtgatccgc
gagcacccggtgatgctgaaccgcgcaccgacgctgcaccgtcttggtattcaggcgttc
gaacccacgctgatcgaaggcaaagcgatccagctgcacccgctcgtctgttccgcgttc
aacgcggacttcgacggcgaccagatggctgtgcacgtcccgctgagccttgaggcccag
ttggaagcgcgcgtcctgatgatgtccacgaacaacgttctgtcgcctgcaaacggcgcg
ccgatcatcgttccttcgcaggatatgatcttgggcctttactatctcacgctggcgcgt
gaaggcgtgaaaggcgaaggcatggtctttggcaacctggacgaggtgcatcacgcgctg
aacgccggggttgtgcatctgcactccaaggtgaccgtgcgggttccgcagatcgacgaa
gagggcaacgaagtcttcgaacgctttgagaccacaccgggccgtgccctgttgggggct
ctgctgccgaagaacgccaaggcgcccttcgagctggtcaaccgtctgctgcgcaaacgc
gaagttcagcaggtcatcgacaccgtctaccgttactgcggtcagaaagagtccgtgatc
ttctgtgaccagatcatgaccatgggcttccgtgaagcgttcaaggccggcatctcgttc
ggtaaggacgacatggtgatcccagagagcaagtggaccatcgtcgacagcacgcgtgat
caggtgaaagactttgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaagtcgtggatgcctggtcgaagtgtaacgacaagctgaccgaggccatgatgtcc
accatctcggcggtcaagaaggacgaggatggctccgacatggaaccgaactcggtctac
atgatggcccactccggtgcgcgtggctccgtgacgcagatgcgtcagctgggcggcatg
cgcggcctgatggccaagccgaacggcgacatcatcgagacaccggttatctcgaacttt
aaagaaggtctgaccgttctggagtacttcaactccacccacggtgcccgtaagggtctg
tcggatactgctttgaagaccgcgaactccggttacctgacccgtcgtctggtggacgtg
gcgcaggactgcatcgtgcgcgagcatgattgtggcaccgagcgtgcgatcaccgcagag
gcggctgtcaacgacggtgaagtcgtggcctccatcggcgagcgcatcctgggtcgcgtt
gcggcagatgatgtgaagcgtcccggcaccgaagagatcctgctggccgccggtcagctg
atcgacgaacgcatggcggatacaatcgaagaagccggcgttcagtccatgcgcatccgc
agcccgctgacctgtgaaagcgaagagggcgtctgcgccatgtgctatggccgtgacctg
gcacgcggtaccatggtcaactccggtgaggctgtcggcatcatcgcggcgcaatcgatc
ggtgaacccggtacacagctgacgatgcggacgttccacatcggcggcgtggcacagggt
ggccagcagtccttcctcgaggcgtcccaggagggcaagatcgtgttcgagaatacgaac
acgctcaccaactccagcggcgaagttctgaccgtgggtcggaacatgaagctgatcatc
caagacgagcacggcgaagagcggtccagccacaagctgggctacggcaccaagctgttc
gtcaaggaaggccagtcggtcaaccgtggcgacaagctgttcgaatgggatccctatacc
ctgccgatcatcgccgagaagccgggtaccgcaaaatacgtcgacctggtcaatggcttg
gctgtgcgtgaggaaaccgacgatgccaccggcatgacccagaagatcgtgatcgactgg
cgtgcggcaccgaaggggtccgatctgaagccggaaatcatccttgtggatgcggatggc
gagccggtgcgcaacgatctgggcaacccggtgacctacccgatgtctgtggatgcgatc
ctgtcggccgaagatggtcaggtgatcgaaaccggtgacgtcgtggcgcgtatcccgcgt
gaaggcgccaagaccaaggacattaccggtggtctgccgcgtgtggccgaattgttcgaa
gcccgtcgtccgaaagatcacgcgatcatcgccgaaatcgatggttacgtgcgctttggc
cgcgactacaagaacaagcgccgcatctcgatcgagcccgcggacgagaccatggacgcc
gtggaatacatggtgcccaagggcaagcacatcccggttgtcgaaggcgacttcgtccag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctctccatcatgggt
gtcgaagcgctggccaactacatgatcgacgaagtccaggacgtttatcgtctgcagggt
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagtgggag
atctccgactccggcgagaccacgctgctcaagggcgagcacgtggacaagcaagagttc
gatcaggccaacgagaaggcgctgtcgcgtggcaaacgtccggctcagggtgcacccatc
ctgcttggtatcaccaaggcgtcgctgcagacccgctccttcatctcggcggcctccttc
caggagaccactcgggtgcttaccgaagcgtcggttcagggcaagcgggacaagctggtt
ggtctcaaagagaacgtcatcgtgggtcgcctgatcccagccggtaccggtggcgccact
cagcaggtccgtcaggttgcatccagccgtgacaatgtggtcctcgaggcccgtcgcatc
gaggccgaagcggctgctgccttggcggcaccgatgatggacgaggacgcaggtgatgcg
gacttcctggtggaaacgccggagagccgcgactga
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integrated database retrieval system
