Tritonibacter scottomollicae: R1T40_14395
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Entry
R1T40_14395 CDS
T09466
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tsco
Tritonibacter scottomollicae
Pathway
tsco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R1T40_14395 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsco03021
]
R1T40_14395 (rpoB)
03400 DNA repair and recombination proteins [BR:
tsco03400
]
R1T40_14395 (rpoB)
Enzymes [BR:
tsco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R1T40_14395 (rpoB)
Transcription machinery [BR:
tsco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R1T40_14395 (rpoB)
DNA repair and recombination proteins [BR:
tsco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R1T40_14395 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WOI32144
LinkDB
All DBs
Position
complement(2867659..2871798)
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDEALPLDGEGIKGVFQSV
FPIKDFNETSVLEFVSYALERPKYDVDECMQRDMTYAAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK
SRGWVAPFFPERVRGTRPTYDLVDAATGEIICEAGKKVTPRAVKKMIDEGNITELLVPFE
HIVGKYVAKDIINEENGAIYVEAGDELTLEYDKDGDIIGGSVKELLDAGVTDIPVLDIDN
INVGPYMRNTMAADKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV
GRVKMNMRLALDAEDTMRTLRKEDIVACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVNDGQVTDEVHYMSATEEMRHTVAQANANLDENNRFVNDLVSTRQSG
DYTLAPNESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEIVARDSGAAIMAKRAGVIDQIDAQRIVIRATSDLEMGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGQTVSKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELGILDRNIYARLRDLLMGKTAVKGPKGVRGNTVIDEDL
LDNQLTRGQWWMLALEDEKDAQILEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVM
KMVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLADGTPVDFCLNPLGVPSRM
NVGQILETHMGWAARGLGLKIDDALQDYRRTGDLTPVRDAMREAYGEDVYDEGISDMDET
QLVEAAGNVTRGVPIATPVFDGAKEDDVNDSLIRAGFDKSGQSILFDGRTGEQFARPVTV
GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcgttccttggccagaaacgtcttcgcaaatattacggcaagatccgcgaa
gtgctggacatgccgaacctcatcgaggtccagaaatcttcctacgatctattccttcgc
tccggcgatgaagccctgccgctcgacggcgagggcatcaaaggcgtgttccagtcggtt
ttcccgatcaaggattttaacgaaacctccgttctggagttcgtgagctacgcgcttgag
cgtccgaagtacgacgtcgacgagtgcatgcagcgtgacatgacttatgcggctccgctg
aaggtcaccctgcgtctgatcgtctttgatgtcgatgaggacaccggcgccaaatccgtg
aaggacatcaaggaacaggacgtcttcatgggcgacatgcctttgatgaccccgaacggc
acatttgtcgtcaacggcaccgagcgtgtgatcgtgtcccagatgcaccgttcgccgggc
gtgttcttcgaccacgacaagggcaagactcactcctcgggcaagctgctgttcgcctgc
cgcatcatcccgtatcgcggctcctggctcgatttcgaattcgacgcgaaagacatcgtc
tttgcccgcatcgaccgtcgccgcaagctgccggtgaccacgctgctctatgccctgggt
ctcgaccaggaaggcatcatggatgcctactacaacaccgtgaacttcaagcttgagaag
tcgcgcggctgggtcgcgccgttcttccccgagcgcgtgcgcggcacccgtccgacctat
gacctcgtggatgccgccactggcgaaatcatctgcgaagccggcaagaaggtcaccccg
cgcgccgtcaagaagatgatcgacgaaggcaacatcaccgagctgctggtgcctttcgag
catatcgtcggcaaatatgtcgccaaggacatcatcaacgaagaaaacggcgcgatctac
gtcgaagccggtgatgagctgaccttggaatacgacaaggatggcgacatcattggcggc
tccgtcaaggaactgctggatgcgggcgtcaccgacattccggttctcgacatcgacaac
atcaatgtcggtccctacatgcgcaacaccatggcggcagacaagaacatgggccgcgac
accgcgctcatggacatctaccgcgtgatgcgtccgggcgagccgcccaccgtcgaagcc
gcctccgcgctgttcgacacgctgttctttgattccgagcgttatgacctctccgctgtg
gggcgcgtgaagatgaacatgcgtctggcactggatgcagaagacaccatgcgcaccctg
cgcaaggaagacatcgtcgcctgtatcaaggcgctggtggagctgcgtgacggcaagggt
gacatcgacgacatcgaccacctcggcaaccgtcgtgtgcgctcggttggcgagctgatg
gaaaaccagtaccgcgttggtctgctgcgcatggagcgcgcgatcaaggaacgtatgtcc
tcggtcgagatcgacaccgtgatgccgcaggatctgatcaacgccaagcccgccgctgcg
gctgtgcgtgaattcttcggctcttcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaaacgccgtctctcggcgcttggccccggcggtctgacccgc
gagcgtgccggctttgaggtgcgcgacgttcacccgacccactatggtcggatgtgcccg
attgaaacgccggaaggtccgaacattggtctgatcaactcgctggcgacctttgcccgg
gtgaacaaatacggcttcatcgagaccccttatcgcgttgtgaacgacggtcaggtgacc
gatgaggttcactacatgtccgcgaccgaggaaatgcgtcacaccgtggcgcaggcgaac
gcaaacctcgacgagaacaaccgcttcgtgaatgacctcgtgtccacccgtcagtcgggt
gactacacgctggccccgaacgaaagcgttgacctcatcgacgtttcgcccaagcagctg
gtatcggttgcggcctcgctcattccgttccttgaaaacgacgatgctaaccgcgctctg
atgggttcgaacatgcaacgtcaggctgttccgctcctgcgcgccgaggcgccgctggtc
ggcaccggcatcgaggaaatcgtggcgcgcgactccggtgcggcgatcatggcgaaacgc
gcaggcgtgatcgaccagatcgacgcccagcgtatcgtgatccgcgccacctccgacctg
gagatgggcgacgcgggtgtggacatctaccgcatgcgcaagttccagcgctcgaaccag
aacacctgcatcaaccagcgtccgctggtgaaagtgggtcagacggtctcaaagggcgag
gtgattgcagatggtccgtccaccgacatgggtgaactggcgctcggcaagaacgtcgtc
gtcgccttcatgccctggaatggctacaactacgaagactccatcctgatctccgagcgg
attgcccgtgacgacgtcttcacctcgatccacatcgaggaattcgaagtcgccgcccgt
gacaccaagcttggtccggaagagatcacccgcgatatcccgaacgtcggtgaggaagcc
ctgcgcaacctcgacgaagcgggcatcgtctacatcggtgctgatgtggaaccgggcgat
atcctcgtgggtaagatcacgccgaagggtgaaagcccgatgacgccggaagaaaagctt
ctgcgtgccatctttggtgagaaagcctccgacgtgcgcgacacctcgctgcgcgtgaag
ccgggcgactacggtactgttgtcgaagtgcgtgtcttcaaccgccatggcgtggaaaaa
gacgaacgtgcgctgcagatcgagcgtgaagaagtcgaacgtctggcccgtgaccgggac
gatgagctcggcattctggaccgcaacatctacgcgcgtctgcgtgacctgctgatgggc
aagactgccgtcaagggtcccaagggcgtgcgcggcaacactgtcatcgacgaggacctg
ctggacaaccagctgacccgtggtcagtggtggatgctggcgcttgaggacgagaaagac
gctcagatcctcgaagccctgaacgagcagtacgaagcacaaaagcgtgctctggatgcc
cgtttcgaggacaaggtcgagaaagtccgtcgtggcgacgatctgccgccgggtgtgatg
aagatggtcaaggtcttcatcgccgtgaagcgcaagctgcagccgggcgacaagatggcc
ggtcgtcacgggaacaagggtgttatctcccgcgtggtgccgatggaggacatgccgttc
ctcgcagatggtactccggtggacttctgcctcaacccgctcggcgtgccgtcgcgtatg
aacgtcggtcagattcttgaaacccacatgggttgggccgcgcgcggtctgggtctgaaa
atcgacgatgcgctgcaggattatcgccggaccggtgatctgacccctgtgcgtgacgcc
atgcgtgaagcctatggtgaggatgtctacgacgagggcatctccgacatggacgagaca
cagctggttgaagcggcgggcaacgtgacccgcggtgttccgatcgccacgccggtcttc
gacggtgccaaggaagatgacgtcaacgactcgctgatccgcgcaggctttgacaaatcc
ggtcagtcgatcctgttcgacggccgcaccggcgagcagtttgcacgcccggttaccgtc
ggcatcaagtacctgctgaagctgcaccacctggtggacgacaagatccacgcccgttcc
accggtccgtactcgctggtcacccagcagccgctcggtggtaaggcgcagttcggtggt
cagcgctttggtgagatggaagtctgggctctggaagcctacggcgccgcctacaccctg
caggagatgctcaccgtgaaatcggatgacgtcgccggccggaccaaggtctatgagtcg
atcgtcaagggcgaggacaactttgaagcgggtgttcccgagagctttaacgttctcgtc
aaggaagtccgcggcctcggcctgaacatggaactcctggatgcggaggttgaggagtaa
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