Tsukamurella sp. PLM1: MTP03_04460
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Entry
MTP03_04460 CDS
T09545
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsd
Tsukamurella sp. PLM1
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsd03016
]
MTP03_04460
Enzymes [BR:
tsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MTP03_04460
Transfer RNA biogenesis [BR:
tsd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MTP03_04460
Prokaryotic type
tRNA splicing ligases
MTP03_04460
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDH55507
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All DBs
Position
403387..404535
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AA seq
382 aa
AA seq
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MEKISKSLVSWASILDEKTREQAITTAKLPFIYPHIALMPDAHLGKGATVGSVIPSLGAV
IPAAVGVDIGCGMIAVRTQFTLADLPDDRATVREAIERAIPLSPGRYNKKVAATAEPRIA
ELTALAERADFDPAQYAGNWRLQLGTLGGGNHFAELSIDSDQRVWAFLHSGSRGVGNKIA
QHHIAVATRLCKQWWIELPDPDLAYLVERTPEFRRYIAELTWAQHFALLNREEMMDRVIR
QLGEWVGTRVVEAERINCHHNFTKREKHFGKEVWVSRKGAIEATEGKLGLIPGSMGTASY
IVEGKGYAPSLNSSPHGAGRSTPGPRRARRSRTSSCGRPWRASSSATVPTSSTRSRRPTS
PSTASSLTRSSWSGSAPCCGRS
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcagtaagtccttggtctcgtgggcgtccatcttggacgagaagacccgc
gagcaggcgatcaccacggcgaagctgccgttcatctacccgcacatcgcgttgatgccc
gacgcccacctgggcaagggggccaccgtcggttcggtcatcccgagcctcggcgccgtg
atccccgcggccgtcggcgtcgacatcggctgcgggatgatcgcggtccgcacccagttc
acgctggccgacctgcccgacgaccgcgcgacggtccgcgaggccatcgagcgggcgatc
ccgctctcgccgggccgctacaacaagaaggtcgcggccacggcggagccgaggatcgcg
gagctgacggcgctcgccgagcgggccgatttcgacccggcccagtacgcggggaactgg
aggctccagctgggcacgctaggcggaggaaatcactttgcagagctaagcattgatagc
gaccagcgggtttgggcattcttgcactccggctcccgtggggtcggcaacaagatcgcc
cagcaccacatcgccgtcgctacccgcctctgcaagcagtggtggatcgagctgccggat
ccggacctcgcgtacctcgtggagaggacgcccgagttccgccggtacatcgccgagctg
acgtgggcgcagcacttcgcgctgctcaaccgtgaggagatgatggaccgggtgatccgc
cagctcggcgagtgggtggggacacgtgtcgtcgaggcggagcggatcaactgccaccac
aacttcaccaagcgtgagaagcacttcggcaaggaggtgtgggtgtccaggaagggcgcg
atcgaggcgaccgagggcaagctcggcctcatcccgggctccatgggcaccgcgtcctac
atcgtcgagggcaagggctacgccccgtcgctcaacagctcgccgcacggcgcgggcagg
agtactcccggtccgcggcgcgcaagacgttcacgcacgagcagttgcgggaggccatgg
cgggcatcgagttccgcgacagtgccgacttcatcgacgagatcccgcaggcctacaagc
ccatcgaccgcgtcatcgctgacgcggagcagttggtcagggtccgcgccgtgctgcggc
agatcgtga
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