Tsukamurella sp. PLM1: MTP03_06440
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Entry
MTP03_06440 CDS
T09545
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tsd
Tsukamurella sp. PLM1
Pathway
tsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTP03_06440 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsd03021
]
MTP03_06440 (rpoB)
03400 DNA repair and recombination proteins [BR:
tsd03400
]
MTP03_06440 (rpoB)
Enzymes [BR:
tsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTP03_06440 (rpoB)
Transcription machinery [BR:
tsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTP03_06440 (rpoB)
DNA repair and recombination proteins [BR:
tsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTP03_06440 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BDH55705
LinkDB
All DBs
Position
570324..573839
Genome browser
AA seq
1171 aa
AA seq
DB search
MAVSVSSQTQNDQNDAVVPGAPKRVSFAKISEPLPVPGLLDLQIDSFEWLVGTPAWREKA
AARGEAQPTGGLEDILAELSPIEDFSGSMSLSFSDPRFDEVKASIEECKDKDMTYAAPLF
VTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDETIDKS
TEKPLHSVKVIPARGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQILERFGF
SEIMRSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRY
KLNKKLGLPANSDGTQPLVLTEEDIVATIEYLVRLHEAPSEQLTYMTVPDGDEVPVEVDD
IDHFGNRRLRTVGELIQNQLRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVSAAIKE
FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP
EGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGQTTDEVVYMTADEEDRYYIAQANAATD
ANGRLSDDKVLVRKRGSEVEFVPVSAVEYMDISPRQMVSVATAMIPFLEHDDANRALMGA
NMQRQAVPLVRSESPLVGTGMELRAAVDAGDVVITEKPGVVEEVSADFITIMADEGTRKT
HKLRKFARSNQGTCANQRPIVNAGQRVEAGQVLADGPCTDNGEMALGKNLLVAIMPWEGH
NYEDAIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI
IRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIG
VRVFSRDDDDELAPGVNELVRVYVAQKRKVQDGDKLAGRHGNKGVIGKILPAEDMPFLPD
GTPVDIILNTHGVPRRMNIGQILETHLGWVAKTGWDVRDENGNIPDWASQLPEEMYAQPK
DTNTATPVFDGARDEELAGLLGSTLPNRDGDVMVQADGKATLFDGRSGEPFPYPVAIGYM
YILKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL
LTIKSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMA
DGDDEDLERAAANLGINLSRNENASAEDLAN
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctccgtctccagccagactcagaacgatcagaacgacgccgtggtgcccgga
gcgcccaagcgcgtgtcgttcgcgaagatctccgagccccttcccgtgccgggcctgctc
gacctgcagatcgactcgttcgagtggctcgtcggtacgcccgcttggcgggagaaggcc
gccgcgcgcggcgaggcacagcccaccggcggtctggaggacatcctcgctgagctgtcg
cccatcgaggacttctcgggctcgatgtctctctccttctccgatccgcgcttcgacgag
gtcaaggcctcgatcgaggagtgcaaggacaaggacatgacgtacgcggcgccgctgttc
gtcaccgccgagttcatcaacaacaacaccggcgagatcaagtcgcagaccgtcttcatg
ggcgatttcccgatgatgaccgacaagggcacgttcatcatcaacggcaccgagcgtgtc
gtcgtctcgcagctcgtccgcagcccgggcgtgtacttcgacgagaccatcgacaagtcg
accgagaagccgctgcacagcgtcaaggtcatcccggcccgcggcgcgtggctcgagttc
gacgtggacaagcgcgacaccgtcggcgtccgcatcgaccgcaagcgccgccagccggtc
accgtgctgctcaaggccctcggctggaccagcgagcagatcctcgagcgcttcggcttc
tcggagatcatgcggtccaccctggagaaggacaacacggccggcaccgatgaggcgctg
ctcgacatctaccgcaagctgcgcccgggcgagccgcccacgaaggagtcggcgcagacc
ctgctggagaacctgttcttcaaggagaagcgctacgacctggcccgcgtcggccggtac
aagctgaacaagaagctcggtctcccggcgaactccgacggcacgcagccgctggtgctc
accgaggaggacatcgtcgcgacgatcgagtacctcgtgcgcctgcacgaggcaccgtcg
gagcagctcacctacatgaccgtgccggacggcgacgaggtccccgtcgaggtcgacgac
atcgaccacttcggcaaccggcgcctgcgcaccgtcggcgagctgatccagaaccagctg
cgcgtgggcctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacgtc
gaggcgatcaccccgcagaccctgatcaacatccgcccggtctcggcggcgatcaaggag
ttcttcggcacctcgcagctgtcgcagttcatggaccagaacaacccgctgtcgggcctg
acccacaagcgccgcctgtcggccctcggccccggtggtctgtcgcgtgagcgcgcgggc
ctcgaggtccgcgacgtccacccgtcgcactacggccgcatgtgcccgatcgagacccct
gagggcccgaacatcggcctgatcggctcgctgtcggtgtacgcgcgggtcaatccgttc
ggcttcatcgagacgccgtaccgcaaggtcgtcgacgggcagaccaccgacgaggtcgtc
tacatgacggccgacgaggaggaccgttactacatcgcgcaggccaacgccgcgaccgat
gcgaacggtcgcctgtcggacgacaaggtgctcgtgcgtaagcgcggctccgaggtggag
ttcgtccccgtctccgctgtggagtacatggacatctcgccgcgccagatggtgtcggtc
gcgacggccatgatcccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcg
aacatgcagcgccaggccgtgccgctggtccgttccgagtcgccgctggtcggcaccggc
atggagctgcgcgccgcggtcgacgccggcgacgtggtcatcaccgagaagccgggtgtc
gtcgaggaggtctccgccgacttcatcacgatcatggccgacgagggcacgcgtaagacc
cacaagctgcgcaagttcgcgcgcagtaaccagggcacctgcgccaaccagcgcccgatc
gtcaacgcgggccagcgggtcgaggccggacaggtcctggccgacggcccctgcaccgac
aacggtgagatggcgctcggcaagaacctgctcgtggcgatcatgccgtgggagggccac
aactacgaggacgcgatcatcctctcgcagcgcctggtggaggaggacgtgctgacgtcc
atccacatcgaggagcacgagatcgatgcccgcgacaccaagctgggcgccgaggagatc
acccgggacatcccgaacgtctccgacgaggtgctggccgatctcgacgagcgcggcatc
atccgcatcggcgccgaggtccgcgacggcgacatcctggtcggcaaggtcaccccgaag
ggcgagaccgagctgaccccggaggagcggctgctccgcgcgatcttcggtgagaaggcg
cgcgaggtccgcgacacgtcgctcaaggtgccccacggcgagaccggcaaggtgatcggc
gtccgcgtcttctcgcgcgacgacgacgacgagctggcccccggcgtgaacgagctggtc
cgcgtgtacgtggcccagaagcgcaaggtccaggacggcgacaagctggccggccgccac
ggaaacaagggcgtcatcggcaagatcctccccgccgaggacatgcccttcctgcccgac
ggcaccccggtcgacatcatcctcaacacgcacggcgtgccgcgtcgtatgaacatcggc
cagatcctggagacccacctcgggtgggtcgccaagaccggctgggacgtgcgcgacgag
aacgggaacatcccggactgggcgtcgcagctccccgaggagatgtacgcccagcccaag
gacaccaacacagccacccccgtcttcgacggtgcgcgggacgaggagctggccggcctg
ctcggctcgacgctcccgaaccgcgacggcgacgtgatggttcaggccgacggcaaggcg
acgctgttcgacggccgctcgggcgagcccttcccgtacccggtggccatcggctacatg
tacatcctcaagctgcaccacctggtcgacgagaagatccacgcccgctcgaccggtccg
tactcgatgatcacgcagcagccgctgggtggtaaggcgcagttcggtggtcagcgcttc
ggtgagatggagtgctgggccatgcaggcctacggcgccgcctacaccctgcaggaactg
ctcaccatcaagtcggacgacgtggtcggccgcgtgaaggtgtacgaggcgatcgtcaag
ggcgagaacatccccgagcccggcatccccgagtcgttcaaggtgctcctcaaggagctc
cagtcgctctgcctcaacgtggaggtcctgtcgtccgacggtgccgccatcgagatggcc
gacggcgacgacgaggatctcgagcgcgctgctgccaacctcggcatcaacctctcgcgc
aacgagaacgcctccgccgaagacctcgcgaactag
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