Tsukamurella sp. PLM1: MTP03_06450
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Entry
MTP03_06450 CDS
T09545
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsd
Tsukamurella sp. PLM1
Pathway
tsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTP03_06450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsd03021
]
MTP03_06450 (rpoC)
03400 DNA repair and recombination proteins [BR:
tsd03400
]
MTP03_06450 (rpoC)
Enzymes [BR:
tsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTP03_06450 (rpoC)
Transcription machinery [BR:
tsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTP03_06450 (rpoC)
DNA repair and recombination proteins [BR:
tsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTP03_06450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Caldesmon
TarH
Motif
Other DBs
NCBI-ProteinID:
BDH55706
LinkDB
All DBs
Position
573870..577826
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITEVDEEQRHNEQSTLEAEIESEKKVLADQRDVDLENRAKKLEDD
LAVLEAEGAKADQRRKVKDGGEREMRQIRDRAQRAIDELDEIWTTFVKLAPKDMIVDEKL
YRELQDRYGEYFKGAMGAEAIKKLIENFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTTEKKDAVGAYA
PAAEDQPETGVYSSPAEAIMAVDLGDLSIQAPIKVRLTQQRPPAEIEAELFDGAWTRGQA
WTAETTLGRVLFNELLPADYPFIDEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPSKKDILDRYEERADGIERKYARGALTSGERRDALVEIWKQA
TDEVGKAIDDFYPEDNPITMIPKSGATGNMTQVRNLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCNTTRGIIVPL
AELQADGSLIRDAHVETSAYARTLAEDAVAKDGTVVVERGHDLGDPQIEALLAAGIDQVK
VRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVTELFEARVPKGKAPIAEVSGRIRLEDDDRFYTITITPDDGSEEVVYDKIS
KRQRLRVFKHDDGSERLLADGDHVQVGQQLLEGAADPHEVLRVMGPRQVQVHLVNEVEEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERSEFEAENRRVVAEGGEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINTRSDKLVGLKENVIIGKLIPAG
TGINKYRNIQVQPTEEARAAAYSVPSFDDQYYGPEGAFGAPSGAAVPLDDYGFSDGYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgaactgaagatcggtctggcgaccgccgatgacatc
cgtaactggagctacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccc
gtcacccacatctggtatttcaagggcgtcccgtcgcgccttggctacctgttggacctg
gcgcccaaggatctcgagaagatcatctacttcgcggcctacgtgatcaccgaggtcgac
gaggagcagcgccacaacgagcagtccacgctcgaggccgagatcgagtcggagaagaag
gtcctcgcggaccagcgcgacgtcgatctcgagaaccgcgccaagaagctcgaggacgac
ctcgccgtcctcgaggccgagggcgccaaggccgaccagcgccgcaaggtgaaggacggc
ggcgagcgggagatgcggcagatccgcgaccgcgcgcagcgcgccatcgacgagctggac
gagatctggacgaccttcgtcaagctcgctccgaaggacatgatcgtcgacgagaagctc
taccgtgagctgcaggaccgctacggcgagtacttcaagggcgccatgggcgccgaggcg
atcaagaagctgatcgagaacttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgtagtggcaagggccagaagaagctccgggcgctgaagcgactcaaggtcgtcgcg
gcgttccagcagtcgggcaactcgccgctgggcatggtcctcgacgcggtgccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccggttcgccacgtccgacctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccggcgcggccgtccggtcaccgggccgggcaaccgtccgctgaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcgtcgtgggtccgcagctcaagctgcaccag
tgcggcctgccgaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtggatctcaaccacgcgcagaacatcaagtcggccaagcggatggtcgagcggcagcgg
ccgcaggtgtgggacgtcctcgaagaggtcatcgccgagcaccccgtgctgctcaaccgt
gcccccacgctgcaccgcctgggcatccaggccttcgagccgcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgccggcgtcgggccgcccgctcgccatgccccgtctggac
atggtgaccggcctgttccatctgaccacggagaagaaggacgccgtcggcgcctacgct
ccggcggccgaggaccagccggagaccggcgtgtactcgtccccggccgaggccatcatg
gccgtcgacctgggcgacctgtcgatccaggcgccgatcaaggtgcggctcacgcagcag
cgtccgccggccgagatcgaggccgagctgttcgacggcgcctggacgcgcggtcaggcc
tggacggccgagaccaccctgggccgcgtgctgttcaacgagctgctgccggcggactac
ccgttcatcgacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgacctggcc
gagcggtacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggcgtcacggtctcgatgtccgacgtgctcgttccgccgagc
aagaaggacatcctcgaccgctacgaggagcgcgccgacggtattgagcgcaagtacgcc
cgcggtgcgctcacctcgggtgagcgtcgcgacgcgctggtggagatctggaagcaggcc
acggacgaagtcggtaaggcgatcgacgacttctaccccgaggacaacccgatcacgatg
atcccgaagtcgggtgctaccggcaacatgacccaggtgcgcaacctggcgggcatgaag
ggcctggtgacgaacccgaagggcgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgacggtgctggagtacttcatcaacacccacggcgcgcgtaagggcctggcc
gacaccgccctgcgcaccgccgactcgggctacctgacccgtcgtctggtcgacgtgtcg
caggacgtcatcgtccgcgagaccgactgcaacaccacccgcggcatcatcgtgccgctg
gcggagctgcaggccgacggttcgctcatccgcgacgcgcacgtcgagacctcggcgtac
gcccgcaccctcgccgaggacgcggtcgccaaggacggcaccgtcgtcgtcgagcgcggc
cacgacctgggcgacccgcagatcgaggccctgctcgccgccggcatcgaccaggtgaag
gtgcgctccgtgctcacctgcaccaccggcaccggtgtctgcgcgatgtgctacggccgc
tcgatggccaccggcaagctggtcgacatcggcgaggccgtgggcatcgtcgccgcccag
tcgatcggtgagcccggcacccagctgaccatgcgtaccttccaccagggtggcgtcggt
gacgacatcaccggcggtctgccgcgtgtcaccgagctgttcgaggcccgtgtccccaag
ggcaaggccccgatcgccgaggtctccggccgcatccgcctggaggacgacgaccggttc
tacacgatcaccatcacgccggacgacggcagcgaagaggtcgtgtacgacaagatcagc
aagcgccagcgcctgcgcgtgttcaagcacgacgacggctccgagcgcctgctggccgac
ggcgaccacgtgcaggtgggccagcagctcctcgagggcgctgccgacccgcacgaggtg
ctccgcgtcatggggccgcgtcaggtgcaggtgcacctggtcaacgaggtcgaggaggtg
taccggtcgcagggtgtgtcgatccacgacaagcacatcgagaccatcgtgcgccagatg
ctgcgccgcgtcacgatcatcgattcgggttcgacggagttcctgcccggttcgctgacc
gagcgctcggagttcgaggcggagaaccgtcgcgtcgtggccgagggcggcgagcccgcg
gctggccggccggtgctcatgggcatcacgaaggcctcgctcgcgaccgattcgtggctg
tcggcggcctccttccaggagaccacccgcgtgctcacggacgccgcgatcaacacccgc
tccgacaagctggtgggcctcaaggagaacgtcatcatcggtaagctcatcccggccggt
acgggcatcaacaagtaccggaacatccaggtgcagccgaccgaggaggcccgcgcggcc
gcgtactcggtgccgagcttcgacgatcagtactacggccccgagggtgcgttcggcgca
ccgtccggcgccgccgtgccgctcgacgactacggcttctccgacggttaccggtga
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