Tsukamurella sp. PLM1: MTP03_12870
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Entry
MTP03_12870 CDS
T09545
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tsd
Tsukamurella sp. PLM1
Pathway
tsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP03_12870 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsd03021
]
MTP03_12870 (rho)
03019 Messenger RNA biogenesis [BR:
tsd03019
]
MTP03_12870 (rho)
Transcription machinery [BR:
tsd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MTP03_12870 (rho)
Messenger RNA biogenesis [BR:
tsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MTP03_12870 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
DUF7084
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDH56348
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All DBs
Position
1143533..1145503
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AA seq
656 aa
AA seq
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MTETSLTTGPEAGTASASSARADARRRSGLNGMVLAELRGIASELGIKGISGLRKGDLIA
AITAQQGGGTPAKAPKAAEAPKADAPKADAPQNDRAKNDRAKNDAPKIEAPKADAPKNEA
PKNEAPRNAPKEDAPRDEAGNEARNDAQAADGRDGQAPSDAKGDAQKGDAQKGDAPRAEG
GQQGQRRERNQRRNQNQDGDGRQQGDRQRNQGNNQGQGNRNQNNGPDDDGEGTGRRGRRF
RERRRGRDRGQNDGEPQVGEDDVLQPVAGILDVLDNYAFVRTSGYIAGPNDVYVSMNMIR
RNGLRRGDAITGAVKMPRDGENDGGGNSGGGGGRGNQNNRQKFNPLVRLDSVNGQPVEAA
KNRPEFNKLTPLYPNQRLRLETAQNILTTRVIDLIMPIGKGQRALISAPPKAGKTTVLQD
IANAIATNNPECYLMVVLVDERPEEVTDMQRSVRGEVISSTFDRPPSDHTSVAELAIERA
KRLVEGGKDVVVLLDSITRLGRAYNNSSPASGRILSGGIDSTALYPPKRFLGAARNIENG
GSLTIIATALVETGSTGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVAASNTRKDEL
IMAPDEAAVVNKLRRLLSALDSQQAIDLLISQLKKTKNNIEFLMTVQKNSGFADND
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaacgtcactgaccaccggcccggaggcgggcaccgcctcggccagcagtgcg
cgcgcggacgcgcgtcgccgctccggcctcaacggcatggtgctggcggagctgcgcggc
atcgcgagcgagctggggatcaaggggatctccggcctgcgcaagggcgatctgatcgcc
gccatcaccgcgcagcagggtggcggcacgccggccaaggcgccgaaggcggccgaggcc
cccaaggccgacgcaccgaaggccgacgcgccccagaacgaccgcgcgaagaacgaccgc
gcgaagaacgacgcgccgaagatcgaggcgcccaaggccgacgcgccgaagaacgaggcg
cccaagaacgaggcgccccggaacgcccccaaggaggacgccccgcgggacgaggccggg
aacgaggcccggaacgacgcgcaggcggcggacgggcgtgacgggcaggcaccgtcggac
gcgaagggcgacgcccagaagggcgacgcccagaagggcgacgcaccccgcgccgagggc
ggacagcagggccagcgccgcgagcggaaccagcgccgcaaccagaaccaggacggcgac
ggccgccagcagggcgaccgccagcgcaaccagggcaacaaccagggccagggaaaccgg
aaccagaacaacggcccggacgacgacggtgagggcaccgggcgccgcgggcgccgcttc
cgcgagcgccgccgcggccgcgatcggggccagaacgacggtgagccgcaggtcggcgag
gacgatgtcctgcagcccgtggccggcatcctcgacgtgctcgacaactacgcgttcgtg
cgcacgtcgggctacatcgcggggccgaacgacgtctacgtctcgatgaacatgatccgc
cgtaacggcctccgccgcggcgacgcgatcacgggcgcggtgaagatgccccgcgacggc
gagaacgacggcggcggcaactccggcggcggtggcggccgcggtaaccagaacaaccgg
cagaagttcaacccgctggtccggctggactcggtgaacggccagcccgtcgaggcggcc
aagaaccggccggagttcaacaagctcacgccgctgtaccccaaccagcggctgcgcctc
gagaccgcgcagaacatcctcaccacccgcgtgatcgacctgatcatgcccatcggcaag
ggccagcgcgcgctgatctccgccccgccgaaggccggcaagaccacggtgctgcaggac
atcgccaacgcgatcgccaccaacaaccccgagtgctacctcatggtggtgctggtggac
gagcggcccgaagaggtgaccgacatgcagcgcagcgtgcgcggcgaggtcatcagctcc
accttcgatcggcccccgtcggaccacacctcggtcgccgagctcgccatcgagcgggcc
aagcgcctggtcgagggcggcaaggacgtggtggtgctgctcgactcgatcacccgtctg
ggccgcgcgtacaacaactcgagccccgcgtcgggtcgtatcctctcgggcggtatcgac
tcgacggccctgtacccgccgaagcggttcctgggcgcggcgcgcaacatcgagaacggc
ggctcgctcacgatcatcgcgacggcgctggtagagaccggctccaccggcgacaccgtg
atcttcgaggagttcaagggcaccggcaacgccgagctgaagctggaccgcaagatctcc
gagcggcgcgtcttcccggccgtcgacgtcgcggcgtcgaacacccgcaaggacgagctc
atcatggcccccgacgaggcggccgtggtgaacaagttgcgccggctgctctcggcgctg
gacagccagcaggcgatcgacctgctgatcagccagctcaagaagaccaagaacaacatc
gagttcctgatgacggtccagaagaacagcgggttcgccgacaacgactga
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