Tsukamurella sp. PLM1: MTP03_16750
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Entry
MTP03_16750 CDS
T09545
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tsd
Tsukamurella sp. PLM1
Pathway
tsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP03_16750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsd03019
]
MTP03_16750
03009 Ribosome biogenesis [BR:
tsd03009
]
MTP03_16750
Enzymes [BR:
tsd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MTP03_16750
Messenger RNA biogenesis [BR:
tsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MTP03_16750
Ribosome biogenesis [BR:
tsd03009
]
Prokaryotic type
rRNA processing factors
MTP03_16750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BDH56736
LinkDB
All DBs
Position
1516276..1519371
Genome browser
AA seq
1031 aa
AA seq
DB search
MADNSSPEEQNIEAREEFPQKLRVHALARLLGLTSKEVLAHLGELGFVARSAHSSIDRAA
AERVRDRIAELAGGAPDTTEPAAADPTEAAPAASEAAAAEPVAAEPAIAAPAQLEPAPAQ
LEPAPAQLEQTPSLFSAASVAEPVAEPAAAPTVDPTVPLFLQPEQVTQPPKRTRKPKPAP
AEDEVPAAEAAEPRTEETQAAEPAAQAPAEAEADASSAGGAPSSDEAGDDENTGNRRRRR
GRRGRGRGRGENADEQDGQDQAEQPAADGDRAARPTDAEATDEKSDEASSDDAGESGDDV
EDVTDGGSRRRRRRRRRRAGAGEDGADAGSTDDPPNTVVHEREARPKSRRDEVRGISGST
RLEAKRQRRRDGRDTVRRRPPILTESEFLARREAVDRVMVVRERTGVGPSEGQDGHTVPH
PQDYTQVAVLEDGVLVEHFVTSSSSASMVGNIYLGRVQNVLPSMEAAFVDIGRGRNGVLY
AGEVNWDAAGLDGNARKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG
GGSAGISRKLPDTERKRLKEILKEIVPADAGVIIRTASEGVSAEELAGDVARLQAQWAEI
EEASSQKGVKALYEEPDLLVKVVRDLFNEDFSKLVIEGGRAWDTVEKYVSTVAPDLLPRV
EKFEKAHADAPDVFATYRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGA
GGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDR
TRHQVSEVTSLGLVQMTRKRIGTGLVEAFSTPCQACAGRGIIVHDAPVESNGAEDSGRSG
DRSEGSGRKKRKRSKSDGATPAPSGQAPAAKEPAAHKGEHPMFKAMAAHHDEDAPASQAD
ERARQEQAPEPQAAEALPLSPCRRDARCRGVCGRGARGAGTGRRGTRCRSRCGRGGAGTV
SAPEATGRAQGAHDHVGVRADDRRRHRRAGAGDHGPEHRRCGRSGRRARAQAGAAPGSGP
ARRTCGGRRGE
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacaactcgtcgccggaagaacagaacatcgaagctcgggaggagttcccgcag
aagctgcgcgtccacgcgctggcgcgtctgctggggctcaccagcaaggaggtgctcgcg
cacctcggcgagctgggcttcgtcgcgcggagcgcgcactccagcatcgaccgcgccgcg
gccgagcgcgtccgggatcgcatcgccgagctcgccggtggcgcgcccgacaccaccgag
cccgctgcggctgaccccacagaggccgcccccgcggccagcgaggccgctgccgccgag
ccggttgccgccgagccggcgatcgcggcgcccgcccagctcgagccggcgcccgcccag
ctcgagccggcgcccgcccagctcgagcagacgccgtcgctgttctccgccgcgtccgtc
gcggagcccgttgccgagcccgccgcggcgccgacggtcgatccgaccgttccgctgttc
ctgcagcccgagcaggtgacgcagccgccgaagcgcacgcgcaagccgaagcccgctccc
gccgaggacgaggtgcccgccgccgaggccgctgagccccggaccgaggagacccaggcg
gcagagcccgctgcgcaggctcccgccgaggcggaagccgacgcgtcttccgcgggcggc
gcaccgtcgagcgacgaggccggggacgacgagaacaccggcaaccgccgccgtcggcgt
ggacgccgtggccgcggccgtggccgtggcgagaacgccgacgagcaggacggccaggac
caggcggaacagcccgccgcggacggcgaccgggccgcgcggccgacggacgccgaagcc
accgacgagaagtcggacgaggcgtcgtcggacgatgcgggcgagtcgggagacgacgtc
gaggacgtgaccgacggtggctcgcgtcggcgtcgccgccgccggcggcgacgcgcgggc
gcgggggaggacggtgccgacgccggctcgaccgacgacccgccgaacaccgtggtgcac
gagcgggaggcgcgtcccaagtcgcggcgcgacgaggtgcgcggcatcagcggatcgacc
cgcctcgaggccaagcgccagcgccgccgcgacggtcgcgacaccgtgcgccgccgcccg
ccgatcctcaccgagtcggagttcctggcgcgccgcgaggccgtggaccgcgtgatggtc
gtgcgcgagcgcaccggcgtcggcccgtcggagggccaggacggccacaccgtcccgcac
ccccaggactacacccaggtcgccgtcctcgaggacggcgtgctggtggagcatttcgtc
acctcgtcgagctcggcgtcgatggtcggcaacatctacctgggccgcgtgcagaacgtg
ctgccctcgatggaggcggccttcgtcgacatcggccgcggccgcaacggcgtgctgtac
gccggcgaggtcaactgggacgccgccggcctggacggcaacgcccgcaagatcgagcag
gccctcaagcccggtgatcaggtgctggtgcaggtgtccaaggacccggtgggtcacaag
ggcgcccgtctcaccacgcagatctcgctcgcgggtcgcttcctcgtctacgtgcccggc
ggcggctccgcgggcatctcgcgcaagctgcccgacaccgagcgcaagcgcctcaaggag
atcctcaaggagatcgtcccggccgatgccggcgtgatcatccgcaccgcctccgagggc
gtcagcgccgaggagctcgcgggtgacgtcgcgcggctgcaggcccagtgggcagagatc
gaggaggcctcctcgcagaagggcgtcaaggcgctctacgaggagcccgatctcctggtc
aaggttgtgcgcgatctgttcaacgaggacttcagcaagctcgtcatcgagggcggccgg
gcctgggacaccgtggagaagtacgtctccaccgtcgcgcccgacctgctgccccgcgtc
gagaagttcgagaaggcccacgccgacgcgccggacgtcttcgcgacctaccgcatcgac
gagcagctcgccaaggcgatggaccgcaaggtctggctgccgtcgggcggcacgctggtc
atcgaccgcaccgaggcgatgaccgtggtcgacgtcaacaccggcaagttcaccggcgcc
ggcggcaacctcgaggagacggtcacccggaacaacctcgaggcggccgaggagatcgtg
cggcagatgcgcctgcgcgacatcggcggcatgatcgtcgtcgacttcatcgacatggtc
ctcgagtccaaccgcgacctcgtgctgcgccgcctcaccgaggcgctcggccgcgaccgc
acccgccatcaggtctccgaggtcacgtcgctcggcctggtccagatgacgcgcaagcgg
atcggcaccggcctcgtcgaggccttctccacgccgtgccaggcctgcgcgggccgcggc
atcatcgtgcacgacgcgccggtggagtcgaacggcgccgaggactcgggtcgctccgga
gaccggtccgagggctcgggccgcaagaagcgcaagcgttccaagtccgacggtgccacg
ccggccccgtcgggccaggcaccggccgcgaaggagcccgccgcgcacaagggcgagcac
ccgatgttcaaggccatggccgcgcaccacgacgaggacgccccggcttcgcaggcggac
gagcgcgcgcggcaggagcaggccccggagccgcaggccgccgaggccctgccgctcagc
ccctgccgtcgagacgcccgctgtcgaggcgtctgcggccggggcgcccgcggcgcagga
accggccgccgaggcacccgctgccgcagccggtgcggccgaggaggcgccggcaccgtc
agcgccccggaggcgacgggtcgcgcgcaaggcgcccacgaccacgtcggcgtccgcgca
gacgatcgtcgtcgacatcgccgcgccggcgccggagaccacggccccgaacaccgacgg
tgcgggcgcagcggtcgtcgagcccgcgcgcaagcgggcgcggcgccgggcagcggcccg
gcccgccggacctgcggcgggcggcgtggagagtga
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