Tsukamurella sp. PLM1: MTP03_21480
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Entry
MTP03_21480 CDS
T09545
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tsd
Tsukamurella sp. PLM1
Pathway
tsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP03_21480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsd03019
]
MTP03_21480
03400 DNA repair and recombination proteins [BR:
tsd03400
]
MTP03_21480
Enzymes [BR:
tsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTP03_21480
Messenger RNA biogenesis [BR:
tsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTP03_21480
DNA repair and recombination proteins [BR:
tsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MTP03_21480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BDH57209
LinkDB
All DBs
Position
1940216..1941469
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AA seq
417 aa
AA seq
DB search
MTEDMTVERPGSGLTGVRAERARQVIEALAGPGAALRADQETAVAALLEPAARVLVVQAT
GWGKSAVYWVATALRRAEGAGPALIVSPLLSLMRDQVAAAERAGLRAATLNSSNFEEWGV
IEAALAAGEVDVLLVSPERLANPSFGRRVLDALEGSLGLLVIDEAHAVSDWGHDFRPDYR
RVSDVLTRLHPRTPVLATTATANARVTADVAAQLGDATLVLRGPLARRSLQLNVLPALAP
ITRYAWVAKHLPDLPGSGIVYALTVADADRLVDGVRAVHGAGYPVAAYTGKLDPDTRARL
EDALRANEIKALIATSALGMGFDKPDLGFVVHVGSPPSPVSYYQQVGRAGRAIDHAVVAL
LPSESDAGVWDYFATATIPDPQQMDRVLGALSEDESGEGSRRSRWRQPPVSGVRGSI
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggacatgaccgtcgagcggcctgggagcgggctcaccggtgtccgcgcggag
cgggcgcgccaggtgatcgaggccctcgccggcccgggtgcggcgctccgcgccgaccag
gagaccgcggtggcggcgctcctcgaacccgccgcccgggtgctggtggtgcaggccaca
ggctggggcaagtccgccgtgtactgggtggccactgcgctccggcgggccgagggtgcg
gggcccgcgctcatcgtctcgcccctgctctcgctcatgcgggaccaggtggcggcggcc
gagcgtgccgggctgcgcgcggcaacgctgaactcgtccaacttcgaggaatggggtgtc
atcgaggcggcgctcgccgccggcgaggtggacgttctgctggtctcgccggagcggctg
gcgaatccgtcgttcggccggcgcgtgctggacgcgctggagggttcgctcggcctgctc
gtgatcgacgaggcgcacgccgtgtcggactggggtcacgacttccggcccgactaccgc
cgcgtctccgatgtgctcaccaggctgcacccgcggacgccggtgctcgccaccacggcg
accgcgaacgcccgcgtcacggcggatgtggcggcccagctgggggacgccaccctcgtc
ctgcgcggccccctcgcgcgtcgctcgctccagctcaacgtgctgccggcgctggcgccc
atcacgcggtacgcgtgggttgcgaaacatctgccggacctgccgggttcgggcatcgtc
tacgcgctgacggtggcggacgcggaccgcctggtggacggtgtccgggcggtgcacggt
gcgggctatccggtggcggcgtacaccggcaagctcgaccccgacacccgcgcccgcctc
gaggacgcgttgcgggccaacgagatcaaagcgctcatcgccacttccgcgctggggatg
gggttcgacaaacccgacctgggcttcgtggtgcacgtcggttcgccgccctcgccggtg
tcctactaccagcaggtgggccgcgccggccgcgcgatcgatcacgccgtcgtggcgctg
ctgccgtccgaatccgacgcgggggtgtgggactacttcgccaccgccaccatcccggat
ccgcaacagatggaccgggtgctcggcgcgctgtcggaggacgagtccggggagggcagt
cggcgatcgcgctggaggcagccaccggtatccggcgtacgcggatcgatctga
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