Tsukamurella sp. PLM1: MTP03_38920
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Entry
MTP03_38920 CDS
T09545
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tsd
Tsukamurella sp. PLM1
Pathway
tsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTP03_38920 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsd03021
]
MTP03_38920 (rpoA)
03400 DNA repair and recombination proteins [BR:
tsd03400
]
MTP03_38920 (rpoA)
Enzymes [BR:
tsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTP03_38920 (rpoA)
Transcription machinery [BR:
tsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTP03_38920 (rpoA)
DNA repair and recombination proteins [BR:
tsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTP03_38920 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
BDH58953
LinkDB
All DBs
Position
complement(3535571..3536626)
Genome browser
AA seq
351 aa
AA seq
DB search
MLISQRPTLSEEVISEARSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTDIILNLKGLVVSSEDDEPVTMYVRKQGPGAVTAGDIVPPASVTVHN
PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDRLILDVETKNSMTARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
ADHIAAFSLPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK
LHALGLALKDSPASFDPSQVDGYDPATGTWSDEPSFSSDGDDQDYAETEQL
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgctcatctcgcagcgacccaccctcagcgaagaggtcatctccgaggctcggtcgaag
ttcgtcatcgagccgctggagccgggcttcggctacacgctgggcaactcgctccgccgc
acgctgctgtcgtccatcccgggcgcggccgtgaccagcatccgcatcgacggcgtgctg
cacgagttcaccacggtccccggcgtgaaggaggatgtcaccgacatcatcctgaacctc
aagggcctggtcgtctcgtcggaggacgacgagccggtcaccatgtacgtgcgcaagcag
ggcccgggcgccgtcaccgcgggcgacatcgtcccgccggcgtcggtcaccgtccacaac
cccgatctgcacatcgcgaccctgaacgacaagggcaagctcgagatcgagctcgtcgtc
gagcggggtcgcggctacgtgccggccgtgcagaacaaggcgtcgggcgccgagatcggc
cgcatcccggtcgactcgatctactcgcccgtcctgaaggtgacctacaaggtggaggcc
acccgtgtcgagcagcgcaccgacttcgaccgtctgatcctggacgtcgagacgaagaac
tccatgaccgcgcgggacgcgctggcttcggccggcaagaccctggtcgagctcttcggc
ctggcgcgtgagctcaacgtcgaggccgagggcatcgagatcggcccgtcgccggccgag
gccgaccacatcgcggcgttctcgctgccgatcgaggacctcgacctgacggtgcgctcg
tacaactgcctcaagcgcgagggtgtgcacaccgtgggcgagctcgtggcccgcaccgag
tccgaccttctcgacatccgcaacttcggtcagaagtcgatcgacgaggtcaaggtcaag
ctgcacgcgctgggtctggccctcaaggacagccccgcgtcgttcgatccgtcgcaggtc
gacggctacgatcccgccaccggtacctggagcgacgagccgtcgttctcgtccgacggc
gacgatcaggactacgccgagaccgagcagctctga
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