Thiosulfatimonas sediminis: THMIRHAS_01640
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Entry
THMIRHAS_01640 CDS
T06859
Symbol
deaD-1
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tse
Thiosulfatimonas sediminis
Pathway
tse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAS_01640 (deaD-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tse03019
]
THMIRHAS_01640 (deaD-1)
03009 Ribosome biogenesis [BR:
tse03009
]
THMIRHAS_01640 (deaD-1)
Enzymes [BR:
tse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THMIRHAS_01640 (deaD-1)
Messenger RNA biogenesis [BR:
tse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THMIRHAS_01640 (deaD-1)
Ribosome biogenesis [BR:
tse03009
]
Prokaryotic type
rRNA helicases
THMIRHAS_01640 (deaD-1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_30
AAA_19
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBP44791
UniProt:
A0A6F8PRN8
LinkDB
All DBs
Position
complement(186626..188443)
Genome browser
AA seq
605 aa
AA seq
DB search
MSDVTFKDLGLKPEILTAIAEIGYETPSPIQAQAIPALLSGKDILGMAQTGTGKTAAFAL
PALSNADTSQKNPQVLVLAPTRELAIQVSEAFQTFAHHMKGFHVLPIYGGSDYGSQIRAL
KRGVQVVVGTPGRVMDHMRKGTLKLDDLKLLVLDEADEMLRMGFIDDVEWVLEHTPDTRQ
IALFSATMPNEIHRIASNYLNDPIEVIIKQKTATAITIAQKFLLVSGGHKLDALTRILEA
ESSEIDGMIIFVRTKNATIDLAEKLEARGYSAAALNGDIAQNQRERIVDQLKTGKLDILV
ATDVVARGLDVPRISHVVNFDIPQDNESYVHRIGRTGRAGRSGTAILFVTPRERRLLKSI
ERTTKQLVDEMHLPSAQTINDTRVDRFKTRIVEALGQDDLSFYQNLIEQVENEQNVPAAE
IAAALARMMQGDVPFFIEDKPVREVSTRERSGGDRGFERDDRRGDRNNRGDRGERRDNRD
GGAERKPRRQSSAPDEGMSRYRIEVGRSHGVRPGNIVGCIANEANIDSEFIRQLTIEDSY
SMVDLPEKMSKDALADLKKAWVCGQQLKISEVKSQGTERVRLSRHSNKDAKPNPAAPRAR
RKPRD
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgtcacttttaaagaccttggcctaaaaccagaaattcttaccgcaattgcc
gaaatcggctacgaaacgccaagcccgattcaagcgcaggccattcctgccctactttct
ggtaaagacatcttaggtatggcacaaactggtactggaaaaactgcggcttttgcccta
ccagcactgagcaacgcagataccagccagaaaaacccacaagtattagtgcttgcccca
acgcgcgaattggcgattcaggtatctgaagctttccaaacattcgcgcaccacatgaaa
ggcttccacgttctacccatctacggtggttcggattacggctcacaaatccgcgcacta
aaacgcggtgtgcaagtggttgttggtacgccaggtcgtgttatggatcatatgcgtaaa
ggcacgctaaaactggacgatctaaaactgttggttttggatgaagccgatgaaatgctc
cgtatgggcttcatcgatgacgttgagtgggtgcttgaacacacgccagatacacgtcaa
attgcgcttttctcagccacgatgccaaacgaaatccaccgtattgccagcaactacctg
aacgatccgattgaagtcatcatcaagcaaaaaacagcgacggccatcacgattgcacaa
aaattcttactggtcagcggagggcacaaacttgatgcgctaactcgtatcttagaagca
gagtcttccgaaattgacggcatgattatcttcgtgcgcaccaaaaatgccaccattgac
ttggccgaaaaactggaagcgcgcggttactcagccgccgcactgaatggcgatattgct
cagaatcaacgtgaacgcattgttgaccaattgaaaaccggcaaactggatattttagtc
gcaaccgacgtcgttgctcgtggtcttgatgttccacgtatcagccatgttgttaacttt
gatatcccgcaagataacgaatcctacgtgcaccgtatcggtcgtactggtcgtgctggt
cgctccggtactgcgatactgtttgttacaccgcgcgagcgccgtttactgaaatcgatt
gaacgcactaccaaacaattagttgacgaaatgcacttaccgtcagcgcaaaccattaac
gacactcgcgtagatcgtttcaaaacgcgtattgttgaagcgcttggtcaagatgattta
agcttctaccaaaacctaatcgaacaagttgaaaacgagcaaaacgttccggccgctgaa
attgctgccgcgcttgcacgtatgatgcaaggcgacgtgcctttctttatcgaagacaag
cctgtgcgtgaagtttcgactcgtgagcgaagcggtggcgaccgtggatttgagcgtgac
gaccgtcgtggcgatcgcaacaaccgtggcgaccgtggtgaacgtcgcgataaccgtgac
ggtggtgcggaacgtaaaccacgccgtcaaagcagcgcgccggatgaaggcatgagccgt
taccgtatcgaagtcggccgctcacacggcgttcgtccaggtaatatcgtgggttgtatt
gctaacgaagcgaatatcgacagcgaatttatccgtcagctaaccatcgaagacagttat
tcaatggttgaccttccggaaaagatgtcgaaagatgcccttgctgatttgaaaaaagcg
tgggtatgtggacaacaactaaaaatttccgaagtaaaatcacaagggactgaacgcgtg
cgtttaagccgtcacagtaataaagacgctaaaccaaatcctgctgcaccacgtgcgcgc
agaaagcctcgcgattaa
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