Thiosulfatimonas sediminis: THMIRHAS_02530
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Entry
THMIRHAS_02530 CDS
T06859
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tse
Thiosulfatimonas sediminis
Brite
KEGG Orthology (KO) [BR:
tse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tse03032
]
THMIRHAS_02530 (topA)
03400 DNA repair and recombination proteins [BR:
tse03400
]
THMIRHAS_02530 (topA)
Enzymes [BR:
tse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
THMIRHAS_02530 (topA)
DNA replication proteins [BR:
tse03032
]
Prokaryotic type
DNA Topoisomerases
THMIRHAS_02530 (topA)
DNA repair and recombination proteins [BR:
tse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
THMIRHAS_02530 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Extensin_1
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
BBP44880
UniProt:
A0A6F8PSB7
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All DBs
Position
282345..284897
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AA seq
850 aa
AA seq
DB search
MTNLVIVESPAKAKTIEKYLGKDFVVRSSYGHIRDIQKKGMGIDLANRFEPNYEISVDKK
KNVAELRKLTKEADAVWLATDEDREGEAIAWHLAEALNLDVKHTKRIVFHEITKPAIQHA
VANPRLVDMDLVNAQQARRILDRIVGFELSPILWKKIRTGLSAGRVQSVAVRLIVERELE
IEAFEASYSFKVQGQLDLLDETGAVCGNIDVKRNASFDTEEQAQVFLMALGKAQLSVQSL
EEKPAKRTPKAPFTTSTLQQEAASKLGFSVKQTMMIAQRLYESGKITYMRTDSVNLSETA
IAQAKDVVSANYGQNYSHSRRYKTKNADAQEAHEAIRPTDFNVDAVDGERNEQRLYQLIW
RRAIASQMADALLQRTTVEIAISNLVEDKLIAKGEVITFDGFLKVYDFGNKEDEGILPPM
RVGQALALGELAARQSFARPPARYNEASLVRTLEEMGIGRPSTYAPTIDTVQQRGYVVKE
DREGTPREYRQLTLNAAGMDAQTLTEVAGSEKNKLFPTDIARVVTNFLTKHFGDVLDYQF
TAKVEDKFDVIAKGKLHWQDMLAEFYSQFHPKVESAEDVSREEAGQARLLGNDPKSGQPM
YVKIGRFGPYVQLGDGENEEKPQFASLMPGQKMDLLKLEDALELFKLPRHVGDMPESYSA
TAVDGSQFSVEAGQALIAKQGPFGPYLEYGVKQYAPIKGYDPLSITLEEAVLLVEAKIQA
EAEKIVKTFAENGDVKILKGRWGPYITDLTTKKNAKIAKDEDAQQLTLEECIKRLDEAPE
PKRRGGRAKASAAKAPVKKAVAATKKAPAKKAVAKKSPAKKAPAKKAPAKKAPAKKAAAK
KAAAKKTTEA
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacttggtgattgtggagtcgccggccaaggctaaaaccattgaaaagtatttg
ggcaaagactttgttgtgcgctcaagctacggccatatccgagatattcaaaagaaaggc
atgggcattgatttggcgaatcgttttgagccaaattatgaaatctcggtcgataaaaag
aaaaatgttgccgagttacgcaagctaaccaaagaggctgatgcggtctggttggcaacg
gatgaggaccgcgagggggaggccattgcttggcatcttgcggaagcattaaatctggat
gttaagcacaccaagcgtattgtgtttcatgaaatcacaaaaccggctattcaacatgcg
gtggcaaatccgcgtctggtcgatatggatttggtgaacgcacagcaggcgcggcgtatt
ctcgatcgtattgtgggttttgagctgtcgccgattttatggaaaaaaatccgcacgggc
ttgtctgctggacgagttcaatctgtggcggtacgtttgattgttgagcgcgagttagaa
atcgaagcttttgaagccagttacagttttaaagttcaagggcaattggacttgctggat
gaaactggcgcggtatgtggcaacattgatgtaaaacgcaacgccagttttgatactgaa
gaacaagcgcaagtgtttttgatggcgctaggcaaagcgcaattgagtgttcagtcactg
gaagagaaacccgcaaaacgtacccctaaagcgccgttcacaacctcgactttacagcag
gaagccgcgtcaaaactgggcttctcggtaaagcagacgatgatgattgcgcagcgtttg
tatgagtcgggaaaaatcacttacatgcgtaccgattcggtcaatttgtcggaaacggcg
attgcacaagccaaagacgtggtcagcgcaaactatggtcaaaactacagtcatagtcgc
cgctacaagacgaaaaatgccgatgcgcaagaggcgcatgaagcgattcgtccaaccgac
tttaatgttgatgccgttgatggcgaacgtaatgaacagcgtctttatcagttgatttgg
cgtcgggccattgcttcgcagatggcggatgcattattgcaacgtactacggtggaaatt
gcgattagcaatttggtcgaggataagttgattgccaaaggtgaggtgattacctttgat
ggctttttgaaagtttacgattttggcaataaagaagacgagggcattttacctccgatg
cgcgtcggacaggcattggcactcggcgaactggctgcacgtcaaagttttgcccgtccg
ccggcacgttataacgaagccagtttggtacgaacgcttgaagagatggggattggtcgc
ccatctacctatgcgcccaccattgataccgtgcagcagcgtggttatgtggttaaagag
gatcgcgaaggtacaccgcgagaatatcgccagttaactcttaatgctgccggtatggat
gcgcaaaccttaacggaagtggccggttcagaaaagaataaactgtttccaaccgatatt
gcacgtgtcgtcaccaattttttaaccaagcatttcggcgatgttctggattatcaattt
accgctaaggtggaagataaatttgacgtaattgccaaaggtaaattgcattggcaggat
atgttggcggagttttatagccaatttcatccgaaagttgaatcggcggaagatgtttcg
cgagaagaggctggacaagcgcgcttattgggcaatgatccaaaaagcggccagccgatg
tacgtcaaaattggtcgttttgggccttatgtgcagttgggcgacggcgaaaacgaagag
aagccgcaatttgccagtttaatgcctgggcagaagatggatttactcaaactggaagac
gctttagagttgtttaagttgccgcgtcatgtcggtgatatgcctgaatcttacagtgct
acggcggtggatggttcgcagttttcggttgaagcaggccaggcgttgattgctaagcaa
gggccgtttggtccttatttggagtatggcgtaaagcaatatgcaccgattaaaggctat
gatccgttaagtattacgctcgaagaagcggtcttactggtggaggctaagattcaggct
gaggcagaaaaaatcgtaaaaacttttgcagaaaatggcgatgttaaaattcttaaaggg
cgttggggaccgtatattacggatttaaccactaagaaaaacgccaaaattgctaaggat
gaagatgcgcagcaattaaccttggaagagtgtattaagcgcttggatgaggcgccagag
ccaaaacgtcgcggtgggcgagcaaaagcaagtgctgcaaaagcgccggttaaaaaagca
gtggccgctacaaaaaaggcacctgcaaagaaagcggtagctaagaagtcccctgctaaa
aaagcacccgccaaaaaagcacccgccaaaaaagcacccgctaaaaaagcggcggctaaa
aaagcggcggctaaaaaaaccactgaggcgtaa
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