Thiosulfatimonas sediminis: THMIRHAS_03340
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Entry
THMIRHAS_03340 CDS
T06859
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
tse
Thiosulfatimonas sediminis
Brite
KEGG Orthology (KO) [BR:
tse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tse03009
]
THMIRHAS_03340 (srmB)
Enzymes [BR:
tse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THMIRHAS_03340 (srmB)
Ribosome biogenesis [BR:
tse03009
]
Prokaryotic type
rRNA helicases
THMIRHAS_03340 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
Cas3-like_C_2
UvrD-helicase
P-loop_SecA
CMS1
AAA_22
DUF6192
Ned1_M
Motif
Other DBs
NCBI-ProteinID:
BBP44961
UniProt:
A0A6F8PS58
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All DBs
Position
complement(364726..365940)
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AA seq
404 aa
AA seq
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MTFDEFDLDSPLLEGIAKMGYHKPTPVQQEAIPAMLERADVLVGAATGTGKTAAFVLPAL
QYLLDEPRPTRHPRILILAPTRELAFQIHKTVKQLSHNCDFPTAVITGGFNQATQAQTLR
KPTDIIVATPGRLAKMMEEDQVNLSYIELLVLDEADRMLDMGQGPTVRTLLEAIPDEFQA
ALFSATLAGAGVRKFAEDILDEPQEIQIDAPNTKSEQIQQVTYLANDKEHKNALLTNILQ
DASCQSAIVFCNKKERAIALSEYLQSQNISAQVLHGDFIQAVRMEKMHKFKSGKIKVLVA
TDIAARGLDMLNITHVINYDLPYRGDIYIHRIGRTGRAQQVGIAINLVERHDMKALERIE
YHLQQTIPHGKIAGLEANFSIKSAIKAQAKAKKKKPKKNAKKKR
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgacgaatttgatttagattcccccctcctcgaagggattgccaaaatgggt
taccacaagcccacccctgttcagcaagaagcgattcccgccatgctggagcgcgcggat
gtactggtcggtgccgccaccggaaccggcaaaacagccgcgttcgtattgcctgcgtta
cagtatctactggatgagccgcgcccaactcgccacccgcgcatcttgatacttgctcca
actcgcgaactggcttttcaaattcacaagactgttaaacaactcagccataactgcgat
tttcctaccgcagtcataaccggtggcttcaaccaagcaacgcaagcgcaaacgctccgc
aaaccaaccgatattatcgttgccacgccagggcgtttggcaaaaatgatggaagaagat
caagtcaatctttcgtatatcgaactactggtattggatgaagctgaccgcatgctggat
atggggcaaggcccaacggttcgcacgttgctggaagcgattcctgacgagttccaagcc
gcgctcttttcagccacccttgctggcgcaggagtgcgtaaattcgccgaagatattttg
gacgagccgcaagagattcagattgatgcgccgaacaccaaatccgaacagattcaacag
gtcacctatttagccaatgacaaagagcataaaaatgcgctcttaaccaatatcttgcaa
gatgccagttgccaaagcgcgattgtgttctgcaacaaaaaagagcgtgccatcgcgtta
agcgaatacctgcaatcgcaaaatattagcgcacaggttctgcatggcgattttatccaa
gcagtacgcatggaaaagatgcacaagttcaaaagcggcaaaatcaaagtactggtggca
accgatattgccgcgcgcggcttagacatgctcaacatcacgcatgttatcaactacgac
ctaccttaccgcggcgacatttatattcaccggattggtcgaacaggacgcgcacaacaa
gttgggattgcgattaacttagtcgaacgccatgatatgaaagcgctggaacgaattgaa
taccatctgcaacaaacgatcccgcatggcaaaatcgctggcctagaagccaatttttcg
attaaatccgccattaaagcgcaagccaaagccaagaaaaagaaaccaaagaaaaacgca
aaaaagaaacgttaa
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