Thiosulfatimonas sediminis: THMIRHAS_05810
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Entry
THMIRHAS_05810 CDS
T06859
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
tse
Thiosulfatimonas sediminis
Pathway
tse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THMIRHAS_05810 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tse03400
]
THMIRHAS_05810 (uvrB)
DNA repair and recombination proteins [BR:
tse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THMIRHAS_05810 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THMIRHAS_05810 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBP45208
UniProt:
A0A6F8PT71
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All DBs
Position
643380..645419
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AA seq
679 aa
AA seq
DB search
MAKSDKTFDLVSSYAPNGDQPSAIAQLVEGLQAGEAYQTLLGVTGSGKTFTIANVIAEVQ
RPTIILAHNKTLAAQLYGEMKGFFPHNAVEYFVSYYDYYQPEAYVPASDTYIAKDSSVNE
QIEQLRLSATKALLERKDVILIATVSAIYGLGDPEMYLKMILQLRLGDIIKQRDILQRLT
AMQYTRNDIELWRGTFRVRGEVIDVFPAEAEEYAVRIELFDDEVEKIVWFDPLTGETLSR
PSRVTIYPKSHYVTPRERVLEMIEQVKIDLKLRLEELRAMHKLVEAQRLEERTKLDIEMM
LELGYCSGIENYSRYLSQRGPGQPPPTLIDYLPKDALMVIDESHVTIPQIGGMYKGDRSR
KENLVTYGFRLPSAMDNRPLKFTEFEGLMPQTIFVSATPGKYEGEHTDTIIEQVVRPTGL
LDPILEVRPALTQVDDLLGEIRWRAAKGQRILVTVLTKRMAENLTEYMEEHHVRVRYMHS
DIDTVERIEIIRDLRLGEFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQT
IGRAARNVEGKAILYADKITRSMQVAMDETERRREKQLAHNQRHGITPQGLNKKVTDILE
GSPYASKAGSSTKKQKAAETTGIYASPQKLTPSQLGAEIKKLEKQMYQAAKDLDFETAAT
LRDQIKTLKSSMVGVGDLG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaaaagtgataagacattcgatttggtttccagttatgcaccaaatggtgatcaa
cccagtgccatcgcccaattggttgagggtttgcaagccggtgaagcctatcaaactttg
ctgggcgtaaccggttcgggtaaaacgtttaccattgcaaatgtgattgccgaggtacag
cggccaacgattatattggcgcacaacaaaacgctggccgctcagttatatggcgaaatg
aaaggcttttttccccacaatgcggtcgagtattttgtttcctattatgattattaccaa
cccgaagcctatgtcccggcatcggatacctacattgcaaaagactcatcggtcaacgag
caaattgagcagttgcgtctttccgccaccaaagccttgctagaacgcaaagatgttatt
ttgattgccaccgtttctgcgatttacggtttaggtgatccagaaatgtatcttaagatg
atcttacagttgcgtttgggtgacatcattaaacagcgcgatattttgcagcgtctgacg
gcgatgcagtacacgcgaaacgacatagagttgtggcgtggaacttttcgtgtgcgtggc
gaagtgattgatgtttttccagctgaagccgaagaatatgcggtgcgtatcgaattgttt
gatgacgaagttgaaaagattgtctggtttgacccgcttaccggtgagacgttgagtcgc
ccatcgcgggtaacgatttatccgaaatcgcactatgttactccgcgcgaacgggtattg
gagatgattgagcaagtcaaaatcgatcttaagttgcgcttagaagagctgcgtgcgatg
cataaattggttgaagcgcagcgtcttgaagagcgaaccaagttagatatcgaaatgatg
ttggagctgggttactgcagtggtatcgaaaactattcgcgttatttatcgcagcgaggc
ccaggtcagccgccgccgaccttaattgattatttgcctaaagacgccttaatggtgatt
gatgaaagtcacgtgacgattccgcaaattggcggtatgtataaaggcgatagatcacgt
aaagaaaatttggtcacttatggtttccgtttgccctctgcaatggataatcgaccgctg
aaatttaccgaatttgaaggcttgatgccgcaaaccatttttgtctcggcgacgcctggt
aaatatgagggtgagcataccgataccattatcgagcaagttgtacgcccgaccggactc
ttagacccgattttagaagtacgtccagcgttgacacaggtagacgatttgcttggtgaa
attcgttggcgagcggccaaagggcagcgtattttggttacagtattaaccaagcgtatg
gcggaaaatttgaccgagtacatggaagagcaccatgtacgcgtacgctatatgcactcg
gatatcgacacggtcgaacggattgaaatcatccgtgatttgcgtcttggcgaatttgac
gttttgattggaattaacttactgcgtgaaggtttagatattcccgaagttgcgttggtc
gcgatactggatgccgataaagaaggtttcttacgttctgaacgttcattgattcagacc
atcggtcgtgctgcgcgtaatgtcgaaggtaaggcgattttgtacgccgacaaaataacc
cgttcgatgcaagtggccatggatgaaactgagcgtcggcgtgaaaagcagttggcgcat
aaccaacggcacggcattactccgcagggattgaataaaaaagtcaccgatattcttgaa
ggttcgccttacgccagcaaggccggaagttccacgaaaaaacagaaggcggctgaaact
actgggatttatgcgtcaccacaaaaattaacgccatcgcagttgggtgcagaaattaaa
aagcttgaaaaacagatgtatcaagcggctaaagacttggattttgaaacggcggcgacc
ttgcgagatcagataaaaacgctgaaatcgagcatggtcggagtcggtgatttaggctag
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