Thiosulfatimonas sediminis: THMIRHAS_11250
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Entry
THMIRHAS_11250 CDS
T06859
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tse
Thiosulfatimonas sediminis
Brite
KEGG Orthology (KO) [BR:
tse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tse03019
]
THMIRHAS_11250
Enzymes [BR:
tse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
THMIRHAS_11250
Messenger RNA biogenesis [BR:
tse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
THMIRHAS_11250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_N
AAA_19
AAA_22
HA2_C
AAA_23
nSTAND3
ResIII
PhoH
SRP54
DUF6746
TsaE
NADAR
AAA_30
NACHT
AAA_16
FtsK_SpoIIIE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BBP45752
UniProt:
A0A6F8PUD3
LinkDB
All DBs
Position
1245047..1249024
Genome browser
AA seq
1325 aa
AA seq
DB search
MLLNFPKKKSELIRFINQECLIFDRYTLSNGLREKPEVIESLEESMSSAWLSRLSKSIEN
ARSRVQKIPQISFPENLPVSARKEELIELIKNNQVVVIAGETGSGKTTQIPKLCLAAGQG
VFGKIGCTQPRRLAARSVAERIAEELGSTVGDLVGYQVRFLDQVKAHSLIKVMTDGILLA
EIQNDPFLNQYDTIIIDEAHERSVNIDFLLGILKQLLLKRQDLKVIITSATINTERFAKH
FALNGKPAPIVEVSGRTYPVEVRYRPLVPYEDEVGNAIEQDMATAIADAVDELEHEDPFG
DVLVFQIGERDIKETAEVLRKRNLKNTEIVPLYARLSMAEQNKVFQVSQKRRIILSTNVA
ETSLTVPGIKYVIDPGQVRISRYSVRSKIQRLPVEKISQASANQRKGRCGRVSEGICIRL
YDEEDFKSRPEFTDPEIQRTSLASIILTMAQLRLGSVKNFPFIEPPNDKSVNDGFRQLYE
IGALDEKRRLTEEGRKIAKLPIEPAVAKMVMQAEKNGVLAEVIVLASVLSIQDPRDLNET
NMQTARQAHKQWDDERSDFLFFLNLWRFYEHQRRHLSQSKLRKLCRTNFLSYIRMKEWHE
LTIQLEQSLKRIGMHVGELHLYEEVKEGNKLSERLSDLHSTALHRALLSGLLGNIAMLDD
ERSYLGTRNTKLFIHPSSVLFKKRPKWILSAELVETSKLFARTNAQIDVRWVEQLAPHLI
KRSYADPHWQKKSGQVGAYESLTLFGLPIITRRHCNYGPINPQDAHKLFLRHGLVEGELS
SKAAFFVHNRRLVEEVERLESKLRRLDLLVDDEQVYQFYAERIPTHIYSQPAFEKWVKRT
EQNAPEQLQALFLSKEWLMKQQADAHLQQNFPDQVALPNKLKIAVDYRFEPGKKQDGAIF
NIALEQLNLLNPQDFEWLTPGLLIEKISCYIKALPKSLRKQFIPAPQYAQLVLSDMSPQK
TEQGQAVPWLSQLVWALNRRANQKVRSEDFGELVLPLHLTPYFILFDAKQKKIAGSADLL
ALKRDYQHLVEAQIQRHQAKQNAQSVLVTHWDFGDLAPEKTIKQKGLEMVAYPALAMEAE
QIVLRLFADQQEAREQHAQAVLALLRRELVDKEKYLQKKLPLQKACLCYAPYGTCVDLTD
DVITRALIQLVAHPEQLRTQQQFNDALEVLRMQWIEQAQSLAKLVTEILTEHQKIAKQVK
GKINPRWLLSLADICQQLDDLIVAGFVRNTPDKWLQQLPRYLQALQRRLEKIDQDPNKDQ
QGIRQLQPLLNLFNERLQDNAYAGREDLIEIRWLLEELRISIFSQPIKTLQPVSIQRLEK
RLRQL
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgttattgaatttccctaagaaaaaaagtgaactgatacgttttatcaatcaagaatgt
ctgatttttgataggtatacgctatcgaatgggctaagagaaaagcctgaagttattgaa
agccttgaggaaagcatgagttcggcttggttaagtcgattgtcaaaatctattgaaaat
gcacgctctcgtgtgcaaaaaataccgcaaatttctttcccagaaaatcttccggtttcc
gctcggaaagaagagctgattgaattaattaaaaataatcaagtggtcgtcatcgctggc
gagacagggtcaggtaaaaccacgcaaattcctaaactgtgtttggcggcagggcaggga
gtgtttggcaaaattggttgtacgcagccacgccgtcttgcggcacgcagtgtggctgag
cggattgcggaagagctcggcagtacggttggggatttggtgggttatcaggtacgcttt
cttgaccaagtaaaagcgcatagtttgattaaagtgatgaccgatggcattttgctggct
gaaattcaaaacgacccgtttttgaatcaatatgacaccatcatcatcgacgaagcgcat
gagcgcagtgtcaacatcgattttctgttggggattctcaagcagcttttattaaaacgc
caagatctgaaagtgattattacctcggctaccattaataccgagcgttttgcaaagcat
tttgcgctcaatggtaagccggcgccgattgttgaggtttcagggcgtacctacccggtt
gaagtgcgttatcggcctctagtcccttatgaagatgaggtgggtaatgcgattgagcag
gatatggcaaccgcgattgccgatgcggtagacgaacttgagcatgaagatccctttggc
gatgtgttggtctttcagattggcgagcgtgatattaaagaaaccgcggaagtgctgcgt
aagcgcaatttaaaaaatactgaaattgtccctttgtacgctcgtttgtcgatggcggaa
cagaataaagtgtttcaagtgtcgcagaaacggcggattattctttcgactaatgtggct
gagacttctctgaccgtgccgggaattaaatacgttatcgacccgggacaagtgcgtatc
agtcgttatagcgtgcgctctaaaattcagcgtctaccggttgaaaaaatttcacaagcc
tcggcgaatcagcgtaaaggtcgctgtgggcgagtgagtgaaggaatttgcattcgtctt
tatgatgaagaggattttaagagccggccagagtttaccgacccagagattcagcgtacc
tcgttggcatcaattattctgaccatggcgcaactgcgcttgggttcagttaaaaacttt
ccgtttattgagccgccgaatgataagtcggtcaatgatggctttcgccaactctatgaa
atcggtgccttggatgagaaacgtcgtttaaccgaagaagggcgcaaaattgctaagttg
ccgattgagccagccgttgccaaaatggtcatgcaagcggaaaagaatggcgttttggca
gaggtcattgtgctcgccagcgtgctcagtattcaagacccacgcgatcttaatgaaacc
aatatgcaaacggcgcgccaagcgcacaagcagtgggatgacgagcgttcggattttttg
tttttcttgaatttgtggcgtttttacgagcatcaacgtcgtcatctatcgcaaagtaag
ttgcgtaaactctgcaggaccaattttctatcgtatattcgtatgaaagagtggcatgag
ttaaccattcagttggaacagagcttgaaacgcatcggtatgcacgttggcgagcttcat
ctttatgaagaggttaaagaggggaataagctgagtgagcgcctaagtgatctgcattcg
actgctctgcatcgtgctttgctttctggtctactcggtaatattgccatgttggatgat
gagcgttcctatcttggcacgcgtaataccaagttgtttatacaccctagttcagtgctg
tttaaaaaacgtccaaagtggattttgtctgcagaattggtggaaacctcaaaattgttt
gcgcgcacgaatgcgcaaatcgatgtgcgttgggttgaacagttagcgccgcatttaatc
aagcggagctatgcggatccccattggcaaaagaaatctgggcaagtcggtgcttatgaa
tcgttaaccttgtttgggttgccgattattacgcgacgccactgtaattatgggccgata
aatccgcaggatgcgcataagctttttttacgccatggtttggtcgagggggaattgtct
tccaaagcggcgttttttgtgcataaccgtcgcttagtggaggaggttgaacgcctggag
tccaagttacgacgtttggatttgttggttgatgatgaacaggtatatcagttttatgct
gaacgtattccgacgcatatctacagtcagccagcgtttgaaaaatgggttaagcggacc
gagcaaaacgcgcccgagcaattgcaagcgctgtttctcagtaaagagtggttgatgaag
cagcaggctgacgcccacttgcagcagaactttccagaccaagtggctttgccaaataaa
cttaaaatcgctgttgattaccgttttgaacccggtaaaaaacaagacggtgcaattttc
aatattgcgctagaacagctgaatttactcaatccgcaagattttgaatggttaactcca
gggttgctaattgaaaaaatttcttgttatatcaaagcattacctaaatctttgcgaaaa
cagtttatacctgcgccacaatatgcgcagttggtacttagtgatatgtcaccgcagaaa
accgagcaagggcaagcggtcccttggttgtcgcagttggtttgggcgctaaaccgccgt
gccaatcagaaggtacgaagcgaagattttggggaattggtgttgccgttgcatttaacg
ccgtactttattttgtttgatgcaaagcaaaagaaaattgcagggagtgcggatttattg
gcgcttaaacgagattatcaacatctggtggaggcgcaaattcagcgccaccaagccaaa
caaaatgcgcaaagtgtgctggttacgcactgggattttggggatttggcaccggagaaa
acgatcaagcaaaagggtttggagatggttgcttatcctgccttggcgatggaagctgaa
cagattgttttgcgtttgtttgctgaccagcaagaagcaagagagcagcacgcgcaggcg
gtgttggcgttattgcgtcgtgagttggtggataaagagaagtatttgcagaagaaatta
ccacttcaaaaagcctgcctctgttatgcgccctatgggacttgtgtcgatttaaccgat
gatgtgattacccgtgccttaattcagttggtggcgcatcctgagcaattgcgcacccag
cagcagtttaacgatgcgctcgaggtgttgcgtatgcaatggattgaacaggcgcagagt
ctggctaaattagttactgaaattttgactgaacatcaaaaaatagctaagcaagtgaaa
ggtaagattaatcctcgctggttgttgtctttggcggatatttgtcaacagttggatgat
ttaattgtggcgggttttgtacgcaacacccctgataaatggttgcaacagctgccgcgc
taccttcaggcgttgcaaagacgtttagagaagattgatcaagatccaaataaagaccag
caggggattcgacagcttcagcctttgttgaatctgtttaatgaacgtctgcaagacaat
gcctatgcgggtcgtgaagacttaatcgaaattcgttggctgcttgaagagttacgtatt
tcaatattttcgcaaccgataaaaactttgcaaccggtctcgatacagcgtcttgaaaaa
cgtttgcgtcaattgtga
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integrated database retrieval system
