Thiosulfatimonas sediminis: THMIRHAS_11650
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Entry
THMIRHAS_11650 CDS
T06859
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tse
Thiosulfatimonas sediminis
Pathway
tse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAS_11650 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tse03019
]
THMIRHAS_11650 (rhlE)
Enzymes [BR:
tse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THMIRHAS_11650 (rhlE)
Messenger RNA biogenesis [BR:
tse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THMIRHAS_11650 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
ERCC3_RAD25_C
CMS1
DegT_DnrJ_EryC1
Fn3_Dep-1_5th
Cas3-like_C_2
DUF7185
Motif
Other DBs
NCBI-ProteinID:
BBP45792
UniProt:
A0A6F8PUH0
LinkDB
All DBs
Position
complement(1287350..1288717)
Genome browser
AA seq
455 aa
AA seq
DB search
MKFTELGLNAHILKAVADSGYSTPTPIQAQAIPAILAGHDVMAAAQTGTGKTAGFTLPLL
ENLSKGRQAKANQARALILTPTRELALQVSESVETYGKELRLSSSVVYGGVKINPQMLRM
RKGVDILVATPGRLLDLYQQNAVRFDELEVLILDEADRMLDMGFIRDIKKILTLLPAKRQ
NLLFSATFSDDIRALAKGLVHNPVEISVTPENSTADTVKQKIYPVDKAQKTNLLIKLIQD
HAWYQVLVFTRTKHGANRLATQLEKHKIRAAAIHGNKSQNARVRALTDFKENKLQVLVAT
DIAARGIDIDLLPHVVNFDLPHVSEDYVHRIGRTGRAGANGEAISLVCAEEHEELVGIEN
LINQILPREMVPGFEPSQPLGESKLGLKKRKPKKPKKAKEWSDKAPPGRSAPRSGKSNAG
SDAPKPARRKPRNNPNRPANGGRNSAPRRNTPKES
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgaacttggcttaaatgcccatattctaaaagccgttgcagacagcggt
tacagcactccgacgccgattcaagcacaagcgatccccgcaattttagcagggcatgat
gttatggcagctgcgcaaaccggtaccggcaaaacggcgggctttacgctaccgcttctg
gaaaacctctcgaaaggtcgccaagcaaaagccaaccaagcacgcgcgttgattttaact
ccaacccgagaactggcactgcaagtaagtgaaagtgtcgaaacctacggcaaagaacta
cgattaagttccagcgtggtatacggtggcgtcaaaatcaatccacaaatgctgcgtatg
cgtaaaggcgtcgacatcttagtcgcgacaccgggacgtttactggatttatatcaacaa
aatgcggtgcgttttgatgaactggaagtattaatcctcgatgaagccgaccgaatgctg
gatatgggttttatccgcgacattaaaaagattttgacgttgctaccggcaaaacgccaa
aaccttcttttctcagcaaccttctcagatgacatccgcgccttagcaaaagggttggtg
cataatccggtagaaatttcagttacccctgaaaactcaaccgcagacacggtcaaacaa
aaaatttatcctgttgataaagcccagaaaaccaatctactgattaagttaattcaagac
cacgcatggtatcaagttttagtctttacccgaaccaaacacggggctaaccgtctggcg
actcaattagaaaaacataaaattcgtgccgcagcaattcacggtaacaaaagccaaaat
gcacgagtacgcgccttaaccgactttaaagaaaacaagttgcaagtcttggtcgccacc
gacattgccgcacgtggtattgatattgatctactgccacacgtggttaactttgattta
ccgcacgtctctgaagactatgtacaccgtatcgggcgtactggtcgcgccggtgcgaat
ggtgaagcgatctctttggtctgtgcagaagaacacgaagaattagtcggtatcgaaaat
ctgattaaccaaattctgccgcgcgagatggtgccaggattcgaaccctcacaaccactc
ggcgaatccaaactgggcttaaagaaaagaaaaccgaaaaaaccgaagaaagccaaagag
tggagtgataaagccccaccaggaagaagcgctccacgttcagggaaatccaacgctggc
tctgatgcgcctaagccggcacgcagaaaaccgcgaaacaatcctaatcgcccagcaaat
ggtggcagaaacagtgccccacgccgcaatactccaaaagagagttaa
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