Trachymyrmex septentrionalis: 108745630
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Entry
108745630 CDS
T11226
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03018
RNA degradation
tsep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108745630
09123 Folding, sorting and degradation
03018 RNA degradation
108745630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108745630
03041 Spliceosome [BR:
tsep03041
]
108745630
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108745630
mRNA degradation factors
5'-3' decay
Lsm complex
108745630
Spliceosome [BR:
tsep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108745630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
108745630
NCBI-ProteinID:
XP_018337412
LinkDB
All DBs
Position
Unknown
AA seq
139 aa
AA seq
DB search
MLPLTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEDIQMKSRGRGEMKGRGQNQRGRGGGRGTFGRGGRGPAPL
GRGGSTQVGNKSQNKPRPK
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgttacctctgactttactaaaaacagcacaaaaccaccccatgttggtggagctgaaa
aatggagaaacttacaatggtcatttggtcagttgcgataattggatgaacataaacctc
agagaggttatatgtacgtcaagggatggtgacaaattctggagaatgcctgaatgctat
ataagaggcagtacaataaagtatttgaggatcccagatgaagtaatagacatggtaaaa
gaagatatacagatgaaatcaaggggacgtggtgagatgaagggtcgaggccagaatcaa
agaggacgtggtggtggaagaggtacctttggcagaggaggaagaggtccagcaccattg
ggtcgtggaggtagtacacaagttggaaataaatcacaaaataaaccaagacctaaatga
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