Trachymyrmex septentrionalis: 108745635
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Entry
108745635 CDS
T11226
Name
(RefSeq) ATP-dependent RNA helicase WM6 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03013
Nucleocytoplasmic transport
tsep03015
mRNA surveillance pathway
tsep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108745635
09122 Translation
03013 Nucleocytoplasmic transport
108745635
03015 mRNA surveillance pathway
108745635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108745635
03041 Spliceosome [BR:
tsep03041
]
108745635
Enzymes [BR:
tsep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108745635
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108745635
Spliceosome [BR:
tsep03041
]
Complex C
Other components
EJC/TREX
108745635
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108745635
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108745635
NCBI-ProteinID:
XP_018337418
LinkDB
All DBs
Position
Unknown
AA seq
471 aa
AA seq
DB search
MGDRSIFGGIVRCGGHYANVFPAKSFILERYFAPQTYRSDQDTMADNDDLLDYEDEEQTE
QVVDGSGDVPSKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAV
LGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRELAFQISKEYERFSKYM
PHVKVGVFFGGLPIQKDEEMLKTVCPHIVVGTPGRILALVRNKKLNLKHLKHFILDECDK
MLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLN
GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRG
MTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR
FGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASYSKFNLLKI
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaccggtccattttcggcggcattgtccgatgcggcggccattacgcgaacgtt
tttccggcaaaatcgttcatcttggagcggtattttgcaccgcaaacttaccgaagtgat
caagatacaatggcggataacgatgatcttttggattatgaagacgaagaacaaactgag
caggtagtcgatggaagcggagatgttccatctaaaaaggaagtcaaaggtacatatgtc
tctatccacagcagtggatttagagatttccttttgaagccagaaattcttcgtgctatt
gtcgactgtggctttgaacatccatctgaagtgcaacatgaatgtattcctcaagcagtt
cttggcatggatatactgtgccaagcaaaatcgggtatgggaaaaacggctgtatttgta
ttagctactcttcagcaactggaattaacagagaaccaagtctatgtcctagtaatgtgt
cacactcgagaactggcttttcaaatcagtaaagaatatgagaggtttagcaaatacatg
ccacatgtgaaagttggcgtattcttcggtggtttacctatccaaaaagatgaagaaatg
ttgaagactgtgtgtcctcatattgttgttggcacccctggtcgtattcttgctcttgta
cggaataagaaattgaatctaaaacacctgaaacattttattcttgacgaatgcgacaag
atgcttgaattattagatatgcgccgggacgtacaggaaatattcagaagcacaccgcac
agcaaacaagtcatgatgttcagtgccacgctgtccaaggagatacgtcctgtctgcaaa
aaattcatgcaagatcccatggaggtctatgtcgatgacgaggcgaagctcactttgaac
ggtctccagcaacattacgttaaattgaaggaaaacgagaagaacaagaagttgtttgaa
ctacttgatgttcttgagtttaatcaggttgtcatatttgtgaagtctgtacaaagatgt
atggctttagcacaacttttaacggaacagaatttccctgcgattgggattcatcggggc
atgacgcaagaggagcggttgtccagatatcaacagttcaaagattttcagaaacgtatt
ttggtggcgacaaatctgtttgggcgtggtatggatatagaacgtgtaaacattgtattt
aattatgatatgccagaagactccgatacatatttgcatagagttgcgcgtgctggtcgt
tttggtacaaagggtcttgccattacattagtaagcgatgaaagcgacgcaaagatattg
aatgatgttcaagaaaggtttgacgtaaatattacagaattaccggacgaaatcgatctc
gcttcatacagtaagtttaacttattaaaaatttaa
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