KEGG   Trachymyrmex septentrionalis: 108745723
Entry
108745723         CDS       T11226                                 
Name
(RefSeq) THO complex subunit 5 homolog
  KO
K13174  THO complex subunit 5
Organism
tsep  Trachymyrmex septentrionalis
Pathway
tsep03013  Nucleocytoplasmic transport
tsep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108745723
  09122 Translation
   03013 Nucleocytoplasmic transport
    108745723
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsep03019]
    108745723
   03041 Spliceosome [BR:tsep03041]
    108745723
Messenger RNA biogenesis [BR:tsep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108745723
Spliceosome [BR:tsep03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108745723
SSDB
Motif
Pfam: FmiP_Thoc5 ATAD4
Other DBs
NCBI-GeneID: 108745723
NCBI-ProteinID: XP_018337537
UniProt: A0A195FQK8
LinkDB
Position
Unknown
AA seq 669 aa
MGKENESDSVKKRRKSVSANSGTSMKDGDMYKIIINYEEKEAVERLSEDDSECFLATCND
IRAAMSKIAKLKSSGDANVKDDIRELQIQTSLAFIELKKLNRMEKFRTKSARDSLVAAKS
SVDSRHLHLQNLLYEVMHLKKEVIKCLQFKSKDELIELVSEEEFYKDAPESISRHEITKN
NSHQLRLARLEWELTQRKQLAALCDELTESKKAVASSIETKQTRLDNLAPQLRSILEASK
PLQESLGLPLDKIRQEHQKASLLASPLYVLYAKASAYRDAYDSTLLVKVEGDEDEAKRAN
NHDGLQESDSDPENQLESIVEETPVHKKRHHRLSREARQEEKRSKLLQRHPLHVKILITL
KNETRLTLHFFYMIYLKVVTVESKLETEDLGGISAGDMLVSESVLRELYPRDLGLESPNP
ANQYQLSRHNMGSFSSLGLGIPYRWAQRMAGLHFVSCDMSEQQQKLTSQELAQDCVESVL
KEIKRRIKARLDLCMEIRQLESGNLPIFISTTDPVPQKISTSLHRFTTMTWKSYSNYVAS
PEFYQRGLVLSVDIFYEAVLRRGSSELVARIAIKPDYPKIAPVFSISISPTVPASADIIR
DIEREVNVMWTKSPTLTAQIQRLRACFDIYLETESMAPKEKIFFYPVRGRTRARPYKYLS
LGGGIFTHR
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgggtaaagagaatgaatcggatagtgtgaaaaaaagaagaaaatctgtgagtgcaaac
agcggaacctcaatgaaagacggagatatgtataagataataattaattatgaagagaaa
gaagctgttgagagattatctgaggatgattccgaatgctttctggcaacttgtaacgat
attcgagcggcgatgagtaaaatagcaaaattaaagtccagtggtgatgcaaacgtaaaa
gacgatattcgtgagctgcaaatccaaacgtcactggcttttatagaactgaagaaacta
aatcgcatggaaaagttccgtacaaaatctgcacgagattctctagtagctgcaaagagt
agcgttgatagcagacatttgcatttacagaatctattgtacgaagtaatgcatttgaag
aaagaagttatcaaatgtcttcaattcaaatctaaagatgaattgatagaacttgtttca
gaagaagaattttataaagacgctccagaaagtatctcgcgacatgaaataacaaagaat
aattctcatcaactgaggctggctcgtttagagtgggaactgacacaacgaaagcaattg
gcggcattgtgcgatgaattgacagagagtaaaaaggcagtagcatccagtattgaaacg
aaacagactcgtttggacaatcttgcgccgcaattgcgctctatattggaagcgagcaaa
ccgttacaagaaagtcttggactgccattggataaaattcgccaggagcatcaaaaagca
tcgttgctcgcatcaccgctctatgtgttgtatgcaaaagcgtctgcttacagagatgct
tatgatagtacgttgctagtcaaggtggaaggtgatgaggatgaagcaaaacgtgcaaac
aatcatgacggtttgcaagagtctgattcagatcctgagaatcagttggaaagtatcgta
gaagaaacacccgtgcataagaaaaggcatcacagattatcccgggaagcgaggcaagaa
gagaaacgatctaaattattacagcgtcatccgttacatgtaaaaatacttatcacatta
aaaaatgaaacgaggctgactcttcactttttttacatgatatatttaaaagtcgttacg
gtagagtcaaaactcgaaacagaagacttgggaggtattagtgctggagacatgctagta
tccgagtcggttcttcgtgaattgtacccacgggatttagggttggagagtccgaatcct
gccaatcagtatcagctctcgcggcataacatgggatcgttttcgtctttgggattaggc
attccttacagatgggcacaaagaatggctggtctacactttgtctcgtgtgacatgagt
gaacaacaacaaaagctgacgagtcaagaattagcacaagactgtgtggagagtgtattg
aaagaaattaaacggcgcataaaagcgaggctggatctatgtatggaaattcgacaacta
gagtccggcaacctgccaatatttatcagcacgacggatcccgtgccacaaaaaatctca
acgtcgttgcatcgattcacgactatgacctggaaaagttactcaaattatgttgcttca
ccggaattttaccaacggggattagtgttgtctgtagacatcttctacgaagctgtactt
cgtcgcggcagtagcgaactcgtggcgaggattgctatcaagccagattaccccaagata
gcaccagtatttagcataagcataagtccaacagtgccagcgtccgccgatattattaga
gatatcgaaagggaagtcaatgtgatgtggaccaagtccccaacattgacagcgcaaata
caacgactgagagcatgtttcgacatctatctggaaactgagagcatggcgccgaaggaa
aagatattcttctatcctgtaagagggcggactcgcgctcggccatacaaatatttatca
ttgggcggaggtatattcactcatcgttaa

DBGET integrated database retrieval system