Trachymyrmex septentrionalis: 108745723
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Entry
108745723 CDS
T11226
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03013
Nucleocytoplasmic transport
tsep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108745723
09122 Translation
03013 Nucleocytoplasmic transport
108745723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108745723
03041 Spliceosome [BR:
tsep03041
]
108745723
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108745723
Spliceosome [BR:
tsep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108745723
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
ATAD4
Motif
Other DBs
NCBI-GeneID:
108745723
NCBI-ProteinID:
XP_018337537
UniProt:
A0A195FQK8
LinkDB
All DBs
Position
Unknown
AA seq
669 aa
AA seq
DB search
MGKENESDSVKKRRKSVSANSGTSMKDGDMYKIIINYEEKEAVERLSEDDSECFLATCND
IRAAMSKIAKLKSSGDANVKDDIRELQIQTSLAFIELKKLNRMEKFRTKSARDSLVAAKS
SVDSRHLHLQNLLYEVMHLKKEVIKCLQFKSKDELIELVSEEEFYKDAPESISRHEITKN
NSHQLRLARLEWELTQRKQLAALCDELTESKKAVASSIETKQTRLDNLAPQLRSILEASK
PLQESLGLPLDKIRQEHQKASLLASPLYVLYAKASAYRDAYDSTLLVKVEGDEDEAKRAN
NHDGLQESDSDPENQLESIVEETPVHKKRHHRLSREARQEEKRSKLLQRHPLHVKILITL
KNETRLTLHFFYMIYLKVVTVESKLETEDLGGISAGDMLVSESVLRELYPRDLGLESPNP
ANQYQLSRHNMGSFSSLGLGIPYRWAQRMAGLHFVSCDMSEQQQKLTSQELAQDCVESVL
KEIKRRIKARLDLCMEIRQLESGNLPIFISTTDPVPQKISTSLHRFTTMTWKSYSNYVAS
PEFYQRGLVLSVDIFYEAVLRRGSSELVARIAIKPDYPKIAPVFSISISPTVPASADIIR
DIEREVNVMWTKSPTLTAQIQRLRACFDIYLETESMAPKEKIFFYPVRGRTRARPYKYLS
LGGGIFTHR
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagagaatgaatcggatagtgtgaaaaaaagaagaaaatctgtgagtgcaaac
agcggaacctcaatgaaagacggagatatgtataagataataattaattatgaagagaaa
gaagctgttgagagattatctgaggatgattccgaatgctttctggcaacttgtaacgat
attcgagcggcgatgagtaaaatagcaaaattaaagtccagtggtgatgcaaacgtaaaa
gacgatattcgtgagctgcaaatccaaacgtcactggcttttatagaactgaagaaacta
aatcgcatggaaaagttccgtacaaaatctgcacgagattctctagtagctgcaaagagt
agcgttgatagcagacatttgcatttacagaatctattgtacgaagtaatgcatttgaag
aaagaagttatcaaatgtcttcaattcaaatctaaagatgaattgatagaacttgtttca
gaagaagaattttataaagacgctccagaaagtatctcgcgacatgaaataacaaagaat
aattctcatcaactgaggctggctcgtttagagtgggaactgacacaacgaaagcaattg
gcggcattgtgcgatgaattgacagagagtaaaaaggcagtagcatccagtattgaaacg
aaacagactcgtttggacaatcttgcgccgcaattgcgctctatattggaagcgagcaaa
ccgttacaagaaagtcttggactgccattggataaaattcgccaggagcatcaaaaagca
tcgttgctcgcatcaccgctctatgtgttgtatgcaaaagcgtctgcttacagagatgct
tatgatagtacgttgctagtcaaggtggaaggtgatgaggatgaagcaaaacgtgcaaac
aatcatgacggtttgcaagagtctgattcagatcctgagaatcagttggaaagtatcgta
gaagaaacacccgtgcataagaaaaggcatcacagattatcccgggaagcgaggcaagaa
gagaaacgatctaaattattacagcgtcatccgttacatgtaaaaatacttatcacatta
aaaaatgaaacgaggctgactcttcactttttttacatgatatatttaaaagtcgttacg
gtagagtcaaaactcgaaacagaagacttgggaggtattagtgctggagacatgctagta
tccgagtcggttcttcgtgaattgtacccacgggatttagggttggagagtccgaatcct
gccaatcagtatcagctctcgcggcataacatgggatcgttttcgtctttgggattaggc
attccttacagatgggcacaaagaatggctggtctacactttgtctcgtgtgacatgagt
gaacaacaacaaaagctgacgagtcaagaattagcacaagactgtgtggagagtgtattg
aaagaaattaaacggcgcataaaagcgaggctggatctatgtatggaaattcgacaacta
gagtccggcaacctgccaatatttatcagcacgacggatcccgtgccacaaaaaatctca
acgtcgttgcatcgattcacgactatgacctggaaaagttactcaaattatgttgcttca
ccggaattttaccaacggggattagtgttgtctgtagacatcttctacgaagctgtactt
cgtcgcggcagtagcgaactcgtggcgaggattgctatcaagccagattaccccaagata
gcaccagtatttagcataagcataagtccaacagtgccagcgtccgccgatattattaga
gatatcgaaagggaagtcaatgtgatgtggaccaagtccccaacattgacagcgcaaata
caacgactgagagcatgtttcgacatctatctggaaactgagagcatggcgccgaaggaa
aagatattcttctatcctgtaagagggcggactcgcgctcggccatacaaatatttatca
ttgggcggaggtatattcactcatcgttaa
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integrated database retrieval system