Trachymyrmex septentrionalis: 108747685
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Entry
108747685 CDS
T11226
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03015
mRNA surveillance pathway
tsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108747685
09123 Folding, sorting and degradation
03018 RNA degradation
108747685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108747685
03041 Spliceosome [BR:
tsep03041
]
108747685
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108747685
mRNA cycle factors
Stress granule specific factors
108747685
Spliceosome [BR:
tsep03041
]
Complex C
Other components
Complex C specific factors
108747685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_10
RBD_DEAH11
RRM_occluded
Nup35_RRM_2
POP1_C
Motif
Other DBs
NCBI-GeneID:
108747685
NCBI-ProteinID:
XP_018340829
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MNPGAPNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFS
AFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKER
EKELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFE
DPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYV
KNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIV
GSKPLYVALAQRKEDRKAHLASQYMQRMANVRMQQMGQIFQPSNAGSYFVPTLPQPQRFY
GPAQMAQIRATPRWPAQPNQVRPNAQTGTSGFASMQAAPFRAAPRAPAAQAGALRNSMSA
RPITGQQAVGGANMQSRTMAGPAVGVSPGQSRPSNYKYTANMRNPPQTAMAIPAPSGPSV
QQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSEL
LHMLEHSESLKAKVEEAVAVLQAHQAKQAVAPKKE
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctggtgcgcccaactatcccatggcctcgctctatgttggcgacttacacacc
gacatcactgaggcgatgctgttcgagaagttctcgtcggctggacccgtcctgtcgatc
cgcgtatgccgcgacatgatcacccgccgctcgcttggctacgcatatgtcaacttccaa
caaccggctgatgctgaacgcgcccttgataccatgaactttgacatgataaaagggcgg
cctattcggatcatgtggtctcagcgcgatccctccctacgcaagtcaggtgtcggaaat
gtatttattaagaatctagacaaaaacatagacaataaagcgatgtatgatacattttcc
gcgttcggtaatatattgagttgcaaggttgcgcaagatgaatcgggtgcgtcaaagggt
tatggctttgtacattttgaaacggaggaagcggctaacaaatctatcgacaaagtcaac
ggaatgttgctaaatggcaagaaggtatacgttggcaaatttatcccgcgcaaggaacgc
gagaaagaattgggtgaaaaagccaaactgttcacgaacgtctacgtgaaaaacttcggc
gaggatatgaccgaggacaaactaaaagatatgttcgagaagtacgggaccattacaagc
cataaagtgatgagcaaagacgatggcaaatcacgtggcttcggatttgtcgcgtttgag
gacccggacgctgccgaacaggcggtgctcgaattgaatggcaaggagattgccgagggc
aaatgtatgtacgttgggcgggctcaaaagaaagccgagcgtcaacaggagcttaaaaga
aaattcgaacaattgaaaatcgaacggctaaatcgatatcaaggcgtaaatttatatgta
aagaacctggacgatacgattgatgacgagcgtctgcgtaaagaatttacgccgttcggc
acgatcacctctgcgaaggtgatgatggaggaagggcgcagtaaaggttttggctttgta
tgcttctcgcagccggaggaagctaccaaggcagttaccgagatgaatggacgcatcgta
ggttctaaacctctctatgtcgctctggcgcaacgcaaagaagatcgtaaggcacatctt
gcctctcagtacatgcagcgtatggcgaacgttcgcatgcagcagatgggtcagatattc
caacccagtaacgccggcagttattttgtgcctacgctgccacagccgcagcgattctac
ggacccgctcagatggcgcagatccgtgcgactccgcgctggccggcgcaaccgaatcaa
gtacgaccgaacgcgcagactggtacctccgggttcgcgtctatgcaagctgcaccgttc
cgagcggcgccgcgcgctcctgccgcacaggctggcgctttgcgcaacagcatgtccgcc
agacctatcacaggtcaacaagcagttggtggtgccaatatgcaaagccgtactatggcc
ggtcccgcagtcggtgtctcgcccggtcagagccgtccgtcgaattacaaatacaccgca
aatatgcgaaacccgccacaaacggccatggctatacctgcacctagtggtccttctgtg
cagcaagcggttcacatccagggtcaagaaccgctcaccgcgtctatgctagccgcggca
ccgccgcaagagcaaaagcaaatgttaggggaacgattattccctctgattcaatgcatg
tatccacaattgaccggtaagatcaccggtatgttgttggaaatcgataacagcgaactg
cttcacatgttggagcacagcgagtctttgaaggccaaggtcgaggaggccgtggccgta
ttacaagcccatcaggccaagcaagcggttgcgccgaaaaaagaataa
DBGET
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