Trachymyrmex septentrionalis: 108747957
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Entry
108747957 CDS
T11226
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
tsep Trachymyrmex septentrionalis
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsep03009
]
108747957
Ribosome biogenesis [BR:
tsep03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108747957
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_MROH2B_C
DAGK_prokar
Motif
Other DBs
NCBI-GeneID:
108747957
NCBI-ProteinID:
XP_018341367
LinkDB
All DBs
Position
Unknown
AA seq
2757 aa
AA seq
DB search
MKNKPIRHKEVNVFRFKPFSERITEIDVDVFHRVTHRNEDEAEEIETYFHETLLKWNVLN
LTDGYTAFRKEVRDIITLPQLLHKKQHVIDTLMLYLRKRDPLFLQPILELIIAVARDLQK
EFYDYFPEFLSEIICLLQTKDAEQIEYTFTTLAYLFKFLWRYLTRNIKTVMPLLLPLLAD
TQPVYINRFAAESFAFVVRKIKDKDSFLKLVLHILEDRNKNAKENGISGCAKLLFEVISG
TPGQFHSCGEQMLLFYFNALQDETIDKTLTYEVLREIITCILQNIHPQKCNIMWNVILKI
IDTFVEKSKQLLKFSEKKHTLVLFLRLIHSIISCKNGRFLIDAVSVIKRFTIMMDRLNED
NNILQEVINVSVAILLASNVKLMQEDSSQLVLKILTVNDMELLYSSVENLIHYSSFEVLV
LPYVMQRSISIGFDNKLLLLLAKVILTKATPCFSGITLDKWRKYILDIRNIEIDYLLLEL
KTLSTDTVSLDALRILVILPHLNPLHEELMNMLKNGLLFLYKKILNGDADGTADINKTAF
IFLLTLESLIHVSEPSILHEFLIKSDIKIVDLINKHYDNTYILNAIDLCMTYFAASQHHS
DYINLALFNKLNDKIEKKFSSPYSNIRMIVAHLYSLFSKVEDLKRPGEPLKMSDGKSAME
LVYLVESESVTIQNYRSKLLHLQALGFQSHAIANLNPKYYEFPLRCLMGNLYINFSLLWQ
PVSLIIASYGNKECPQFWPTFLSELTCNKVPKIERKPSFDCYVISSLEMLIEKHDDKPDF
ENYRILLWKCMAHFSHYAETKNRDLTGLFIDFVNANFFRSNSDEGKYCNVEKRKELIDAD
NTDDENESDEERDEIKVAQVDVMKKNYKVKLLLAQMEIFDKVQNPKMMHREAEMHQIYLD
LISSRNLDIQRAALNCLFAYKYKYLLPYKESLYGLINEKNYKSELTRFKLDRESNMIEEE
HRENLMPIIMKIIYAKMIMKTGMRTGGKTGGFTRRKIILRFLGGVQEDEMIIFIKMAFRP
FKSYVSLEMDETFDLKKYAETIIDTIDLNNVMPPKRMQSAVNLLAIVIEQFGGKMSKKLL
PCLLRILICILAEVNGILRRSGEVYPGYLSMIKNVRTSCVGILARFFTHFENYDWKRHEM
DAVYHVAIFPLLQKLPIEGIHSPTALLKLFMAWSQNSRYYPLFAKYQEDNKSITPLPYIV
QLLSNPKTHQSVINAILEMIEKMLTLQDYGKSNEDAMQVDAQFLPLTPILTNMLEVEEKI
LSNGVNYGSAILLPHVPHVLEFIRDRLRRSNKNINKIELTILSRISEFVTDAETCDIVLK
LIIPVLIRKAASGNNEEAVIGLLMTITNLIKIVNKPEIHLRSIAPLIGLVSDVPARKTLL
QLYRTIAERSMEDRREEMIRDCEVLIELNAWDHRWVDQPNFQKRLDAFELISDRIGKNAI
TLEFGVTVIHNCFYFLKTESDLAMRDCSGQCLKLVGAKLAREHQNNVLNRRYLMDDTILA
LTRKGITSKNEAVRLQSIAFLGHMALECADVHPVLRDLSLLANRADPEVDFFENMQHLQL
YRRARALLKFCTLAKTLRKPFSPKTLTQFILPLCSLYLCNETFIHKNSLVDAAIETVGIV
CRLLPWHHYEIILKYYLGKLRNSTEFQKQVVRIVVIILDSFHYNLSKYKPAEKITQTKVT
GTEDNAAFITEKKETNETTKENENLENTEEGDEEKLEEALNDDNVENIEEIIEKDKEAIK
EDLPIIERQTLLSQYGAKKVVFSISNGLLPHLHRSIVGRTRQESNHKINKKKIASETEED
DLLRVPIALAFVKLLQKMPENLLDTNLPGIFMKLCTFLKSRMESVRRATREILQKIMITL
GPKYLHYLLKELNTLLTKGFQVHVLAYTVQAILFALKPYYQKMDINNNLQSILSVCKVDL
FGLTAEEKEIAGIIKNVSEAKSTKSFDIFHILAEFITESCLVDLILPLKEVLIKTHSHKT
IHKIMECLRNVTLGLADNTYIPLEQMLIFLYGIISESIPDLIPEKKSKKLAEDERRIETK
TLMQRSNYFLISLEPKNRMGIKVTAKTTKHANVHVMIEFGLKLYHILLKRDKVSGMEYKC
YLEPFVSVLSNCLKSHHVKLCTVALQCLNWMLKMDLESMHASISDICDSMFVILHKYAAA
GLSKGDNFDLVMATFKCMSVVVRDVKYFSINADQLKILILYAEQDLHDSDKHATAFTLLK
AIIHRKMIIPEMYTVMEKVAMLSITSELEHVKLQSRSLFYSYLMGYPLGKHLDKHIYFYL
TQLSYEMQPGRLSALEMIHTIVTGFPLKTLTVRSEIIFVMTGARLIDDDDPACRKLCAKC
IKEMLMRISYNDRNKLFDKWPLQWLNDSIRYRTLAAQLCGIFVTVEKNDFDSRLPQVLPL
LLKQFHTNISTSDNAEFGKYMELDNTTNLQKDSNLKEERTKDHHLIQVLQLLLKIAHYTS
FLTDEKYKDFINSFAEYSQSLLAHPHLWVRLAAAQMIGFILTTLDVDKIVELINNPDNDK
IYEGYMYSKPVETVKSLILDLVAQLYPDMTFEQLADQVVKNLIFIAKMLKSITGSVAKNK
EDDRNKMENSNNLSFLWLIRRLRKVVNIEITQAPKSTSVRTAMFKFIAGVVTTVPIEYLN
AILFNIMSPLVREMTTTEETNAELRQLAKEVATIIKKSIGNEEYVKLLNRVQQKLDIKKA
ERRKVRAQQFVTDPELAAKRKLAKQQKKKEAKKRKLDSLKGNKTAKKRKKKVDLDDL
NT seq
8274 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacaagccaatccgccataaagaagtgaatgtctttcggttcaagccattctcc
gagaggataacggaaatcgacgtcgatgtctttcaccgtgtaacacatcggaatgaggac
gaggccgaggagattgagacttattttcacgagacactactgaaatggaacgtactcaac
ctaacggacggttacaccgccttcagaaaggaagtgcgagacatcatcacgttgccccaa
ttgcttcacaagaagcagcatgtgatcgatacgcttatgttgtatctgaggaaacgagat
cctttgttcctgcaaccgatcctggaattaataattgctgtagcgagagatcttcagaaa
gagttttacgattatttcccagaatttctatccgaaataatctgcttgctgcaaacgaaa
gacgctgaacagatagagtatacatttaccactttggcatatttgtttaaatttctatgg
cgatatttgacaagaaatataaaaactgtgatgcccctgttgctaccattgttagctgac
acacagccagtttatataaacaggtttgctgccgaaagttttgcatttgtagttcgcaag
atcaaggataaagattcttttctgaaactggtattacatattttggaggatagaaataaa
aatgccaaggaaaatggaatatcgggttgtgcaaaattattgtttgaagttatatctggt
actccagggcagttccattcctgcggcgaacagatgttactgttttatttcaacgctctg
caagacgagaccattgataaaacgcttacttacgaagtactacgggaaattataacgtgt
atattgcaaaacatacatccacaaaaatgcaatatcatgtggaatgttatactaaaaata
atagacacgtttgttgaaaagtcaaaacagttgttaaaattctctgagaagaaacacact
ttagttctattcctgcgtcttatacatagtattatcagctgtaaaaatggaaggttctta
attgacgctgtatctgtgataaaaaggttcaccatcatgatggacagattgaatgaagat
aataatattttgcaagaagttatcaatgtatccgtagctattctcttggcatccaacgtc
aagttaatgcaggaggactcgagtcaattagtactgaaaattttgacggtgaatgacatg
gaattattatactcctctgttgaaaatttaatacactactcttcgttcgaagttttggta
ttgccttatgtaatgcaacgcagtatatctattggatttgacaataagctactgcttctg
cttgctaaagtaattctcacgaaagcaacaccctgtttcagtggtataactttggacaaa
tggagaaaatacattttagatatacgaaatattgaaattgattacctcttactagaattg
aaaacattatctactgatactgtttcgcttgatgcactgagaattttggtaattttacca
catttgaacccgttgcatgaggaacttatgaatatgttgaaaaatggcttgttattttta
tataaaaagatattgaatggtgatgcagatggcactgcggacattaataaaaccgctttt
atatttttattaacgctggaatcgttaatccatgtgtcagagccaagcattctccacgag
tttttaataaaatctgatataaaaatagttgatttaattaacaaacattatgacaataca
tatatcttaaatgcgatagatctctgtatgacgtattttgctgcgtcgcagcatcactca
gattatataaatttagcgttgtttaacaaattaaacgacaaaatagagaagaaatttagt
tcaccttatagcaatattcgaatgatcgtggcacacttatattccttattttctaaagtc
gaagatctgaaaagacctggtgaacctcttaagatgtctgatggaaaaagtgctatggag
cttgtatatttagtggaatctgaatccgtgacgatacaaaactatcggagtaagttatta
catttgcaagctttaggatttcagagtcatgcgatagctaatttaaatcctaagtattac
gaatttccgttacgttgcttgatgggcaatttgtacataaatttttctctgctttggcaa
cctgtgagtctaattatagctagttatggcaacaaggaatgcccacagttctggccaaca
tttctgtccgagttaacatgtaacaaagtaccgaagattgaacggaaaccgtcgtttgat
tgctatgtgatttcgtcgttggagatgttgatagaaaaacacgatgataagcctgatttt
gaaaattataggatcctcctctggaaatgtatggcacatttctcacattacgccgagacg
aaaaatagagatttaaccggattattcattgatttcgtaaatgcaaatttttttagatct
aattccgacgagggcaaatattgcaatgttgaaaaacgtaaggaattaatcgacgcagat
aatacggacgacgagaacgaaagtgatgaagagcgtgatgagataaaagttgcgcaagtg
gatgtgatgaaaaaaaattacaaggtgaaacttttactcgctcagatggagatattcgat
aaagtgcagaatccgaaaatgatgcatagagaagcggagatgcatcaaatctatctagac
ttgatttcttcgagaaatctcgacatacagagagccgctctgaattgtctctttgcatac
aagtacaagtaccttttgccatacaaggagtccttgtatggtctaataaatgagaagaat
tataagagtgaactcacgcgtttcaagctggaccgggaaagcaatatgatagaagaagaa
catcgcgaaaatctcatgccgatcataatgaaaattatttacgccaaaatgattatgaag
accggcatgaggaccggtggaaaaaccggtggatttacacggagaaaaatcatattgcgc
tttctaggcggtgtacaagaggacgagatgatcatattcataaaaatggcattcagacct
ttcaagtcatatgtatctctggaaatggatgagacattcgatttgaaaaaatatgctgag
accatcatcgataccatcgatctgaataacgttatgccacctaaacgtatgcagagtgcc
gtgaatctattggcgatagtaatagaacaatttggcgggaaaatgtcgaagaagttactg
ccctgtttgctcaggatactaatctgcatcttggctgaggtgaatggaattctccggaga
tcgggggaggtttacccgggatacttgtcaatgatcaagaatgtgaggacaagttgcgtc
ggtatactggctagattctttacacactttgagaactatgactggaaacgacacgagatg
gacgcagtctatcacgtcgcgatatttcccttgttgcagaaattgcctatcgagggtata
cacagtcctacggctttgctgaagctgtttatggcatggagccagaactcgcgatactat
ccgttgtttgccaagtatcaggaggacaacaagtcgatcactcctctcccttacatcgtg
caactcctgtcgaatcccaagacacaccaatccgtcatcaatgccattctggagatgatc
gagaagatgctgactctgcaggattacggaaaatccaacgaagacgcgatgcaggtggac
gcgcagtttctaccgttaactccgatactcactaatatgctcgaagtggaagagaagata
ctttcaaacggggtcaattacggctccgctatacttctgccgcacgttcctcacgttctg
gaatttatcagagatagacttagaaggtccaataagaatataaataagatcgagctgacc
atactgtcgcgaatctccgaatttgtcacggatgccgagacgtgcgatatagtattgaag
ttgataataccagtgttaatcaggaaggctgcatctggtaataacgaggaagccgttata
ggactgctgatgaccatcacgaacctcataaaaattgtaaataagccggagattcacctg
cgttccattgcgccgttgattggcctcgtatcggacgtacccgctcgcaagactcttctg
cagctgtaccggaccattgctgagagatctatggaagaccgtcgtgaggaaatgatccgg
gattgcgaagttctgattgagcttaatgcatgggatcacagatgggtcgatcaaccgaac
ttccaaaagagactggacgcttttgagttgatcagcgacagaattgggaagaatgcgatc
acattggaatttggcgtgactgtaatacacaattgtttttactttttgaaaaccgaatcg
gatttggcgatgcgagattgctccggccagtgcctgaagcttgtcggagcgaaattggca
agagaacaccaaaataatgttctgaacaggcgttacttaatggacgacactatcttggcg
cttacgaggaagggtattacgagcaagaacgaagctgttcgccttcaatcaatagcgttt
ttaggacacatggctctggaatgcgcggacgtgcatcccgttttacgagacttgtcccta
cttgccaatcgagccgaccccgaagtcgatttcttcgagaacatgcaacatctacaactc
tacagaagggctcgcgccttactaaaattctgcacactcgctaagacattgcgaaagcca
tttagtcctaaaacgttgacgcaattcattcttcctctctgctcattgtatttatgcaat
gagacttttattcataagaacagtctcgttgatgctgctatcgagactgtcggaatagtg
tgcagactgttaccgtggcaccactatgaaattattttaaaatattatttaggcaaatta
aggaattccacagagttccaaaagcaagtcgttaggatagtagtaataatattagactct
ttccattacaatctttcaaagtacaaaccagcagaaaaaattacgcaaaccaaagtgaca
ggaaccgaagacaacgctgcttttatcactgaaaagaaagaaactaatgaaacgaccaaa
gaaaatgagaatcttgaaaacacggaagaaggagatgaggaaaaattagaggaagcatta
aatgacgacaacgttgaaaatattgaagaaataatagagaaggataaagaagcgataaag
gaagacttgccaataattgaaaggcaaacgctactttctcaatatggtgcaaagaaagta
gtgttcagtatatcgaacggcttgttgcctcatttgcatcgatccatcgtggggagaact
cggcaagagagtaatcataaaatcaacaagaagaagatcgcttccgagacagaggaggat
gatttactgagagtccccattgctctcgcgtttgttaagttgctgcagaaaatgcctgag
aatcttttggatacaaatctgccaggaatttttatgaaactgtgtacattcctcaaatca
cgtatggaatcggttcgacgtgcgactcgcgagatactacagaaaatcatgataacttta
ggaccgaagtaccttcattatcttttgaaggaacttaatacattgttaacgaaaggtttt
caagtgcacgttctcgcatacacagtacaggctattttattcgcgctgaagccttattac
cagaaaatggatattaataataatttacaaagcattttgtctgtgtgcaaagttgattta
tttggattaaccgcggaagaaaaggagatagcgggtattataaaaaatgtatcggaagca
aagagtactaagagctttgatattttccatatcttagcggagtttataacagaatcttgt
ttagtagacctaattttgccattgaaagaagtattaataaagacgcactcgcataaaacg
atacataagattatggaatgcctccgaaacgtaactctgggattggcggataatacttat
atacccttggaacaaatgctcatatttctttacggtattatttcggaaagcataccagac
cttatacctgaaaagaaaagtaaaaagcttgcggaagatgagcgaagaatagaaacgaaa
actttgatgcaacgatcgaattattttcttatatcactagaacctaaaaacaggatgggt
attaaagttactgcaaaaactaccaaacacgccaacgttcatgtaatgatagaattcggc
ctgaaattgtatcatatattgttgaaacgggacaaagtctccggaatggaatacaaatgt
tatctagaaccatttgtgtcagttttaagtaattgtttaaagtctcatcatgtcaagcta
tgcactgtagcattacaatgcttaaattggatgctaaaaatggacctagaatcgatgcac
gcatcgatatcggacatctgtgattccatgttcgtcattttgcataagtacgctgctgca
ggattaagtaaaggagataacttcgatcttgtaatggccacattcaaatgtatgtccgtg
gtcgttcgtgatgtaaaatacttcagcattaatgccgatcagctgaagattcttatttta
tacgcggaacaagatttacacgacagcgataagcacgctaccgcgtttaccttactcaag
gctataatacatcgaaaaatgattatcccagaaatgtacactgtcatggagaaagtagca
atgctgagtattacctcggagctagagcacgttaaattgcaatcacgttctttgttctat
tcttatctcatgggttatccacttggcaagcatttggacaaacatatatatttctatctc
actcagttgagttacgaaatgcaaccgggtcggctgagcgcactagaaatgattcatacc
attgtcacaggattcccattgaagacgctaactgtaaggtctgaaatcatatttgtaatg
actggtgcaagattaatagacgatgacgacccagcctgccgcaaactttgtgcaaaatgt
ataaaggaaatgcttatgcggatatcctataatgatagaaataagctatttgacaagtgg
ccccttcagtggctaaatgattccataagataccggacattagcggcacagttatgcggc
atattcgtgactgttgaaaaaaacgatttcgattcgcgattacctcaagttttaccattg
ttattaaaacagtttcacacaaatatttcaacttctgacaatgccgaattcggaaaatac
atggaattagataatacgacaaacttacagaaagattccaatttaaaggaagaaagaaca
aaagatcatcatttaattcaagtgttacaactgctattaaagatagcacattatacatct
ttccttacggatgaaaaatacaaagatttcattaactcttttgctgaatatagtcaatct
ttgttggcacatccacatttatgggttcgattagcagcagcacaaatgatcggttttatt
ttgactactcttgacgttgataaaatcgtggaacttataaataatccagataatgataaa
atatatgaaggttacatgtattcgaagcctgttgaaactgtaaagagtttgattctggat
ttagtggctcaactttatccagacatgacatttgaacagttagcagatcaagttgtgaaa
aatctaatctttatcgcaaagatgttaaaatcaattacaggatctgttgcaaaaaataag
gaagatgatagaaataaaatggaaaatagcaataacttatcttttctttggcttatcagg
agattgagaaaagttgttaatatagaaataacgcaagctcccaaatcaacatcagtgaga
actgcaatgtttaagtttattgcgggtgtagtaactacagtacctattgaatatctgaac
gcgatactttttaatattatgtctccattggtacgggagatgactacgacagaagaaacg
aacgctgaattacgtcagcttgcaaaagaagtagctactatcattaaaaagtccatagga
aatgaagaatatgtcaagttactaaatcgagtacaacaaaagttagacattaagaaagca
gaaagaagaaaagttcgtgcgcaacagtttgtgactgatcctgagctagcggctaaacgt
aaactagctaaacaacaaaagaagaaggaggctaaaaaaagaaagctagacagtttgaaa
ggaaacaaaacagcaaaaaaacgtaaaaagaaagtagatctagatgatttataa
DBGET
integrated database retrieval system
