Trachymyrmex septentrionalis: 108749192
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Entry
108749192 CDS
T11226
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108749192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108749192
Enzymes [BR:
tsep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108749192
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108749192
mRNA degradation factors
3'-5' decay
Ski complex
108749192
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
ATPase_2
nSTAND3
DUF3067
PhoH
DUF3516
Motif
Other DBs
NCBI-GeneID:
108749192
NCBI-ProteinID:
XP_018343245
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MAESTQLFTEPPPIWPDIRSELREYIECPERLPIHQLDNTQCYWPRKADVLSLLEFDLAP
VNTTLKFDRDPITGKIGEIQEIDLQGAGETARNSMSMTRAPGLLTDGVRGNPSNIPFWPG
GFEEPKVPKSEDMDNIDFEKDLRTLAKGFSSGLEFKSDNCTPINCMRYEVEASILEETEK
LIINNDNINLMAVIHEEGNLLGSWSSVEEPKKESVQAVDNNIPFIDNSILPKETNIPVLK
ISETQTDLTKAEWAEQLDVSAPVTDFNKRIPDPAITFSYELDTFQKQAILKLEENSNVFV
AAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFKRKFESVGLLTGDLQIN
QTASCLIMTTEILQSMLYCASDVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQNINI
VMLSATVPNPIIFADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDKFLVLDSN
SQFLLDGWYKATNASDKKKDKTSKDCRRKIQMTPKQEEVLWRAFVSHLQNNDMLPVVVFT
LSRKRCDMNAATFRNLDLTTAREKHQVHVFFQHNIKHLKGSDRELPQVLMMQELLEKGVG
IHHSGILPILREIVEMLFQSGVVKLLFATETFAMGVNMPARTVVFDSIRKYDGNNFRTLF
PTEYIQMAGRAGRRGHDTTGTVIVMCRHDVPHFNDLKPMMCGEPQTLESKFKVTYSMLLN
LRRVNESVTVEAMMRKSFKESPLASQEASYNNELRKIERELSNLPPLTEIQKKLSTFYHQ
AVDYLEDVKFLNPYLLTSKKAAKSLIEGRVLLISYTDHYNKLALLLQVLYHKSSAQYKVL
ILKDANVSTSEITDFKSSQIFEKWCEIISLTKKEIFVPNINPSHEVLILFPWHILKITNC
QIKIDCSLVLNDWEKRQISRFKNDPPGQTCQTAVQELTSLSFNASTNARILQPYIEPSSK
NDFQLRIQHRNKLKASLNDMKCMEIPNFEEQFRPVFERNHLEDKKRQLQLKLSDEGMALY
PDYLNMVALLKHFRYIDNDERVALKGRVALQMGSNELLITELILKNVLTVLQPAEIAALL
SALIFQQRTDVEPQLTPTLANACKIMNEVHAELEHLEQYYQLSTLLPLNFGLVEVVYEWA
QAKSFAEIMKMTDVQEGIIVRCIQQLGETLRDVKNAAVTIGDPILKEKMEEASTAIKRDI
VFAASLYTQD
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatcaacacagttatttactgagcctccacccatttggcctgatattagatca
gaactgcgagaatatattgaatgccctgaacgattacctatacatcaactggacaatacc
caatgttattggccacgtaaagcagatgtcctttccttgctagaattcgatttagctccc
gttaataccacgcttaaatttgaccgtgatccaataacaggcaagattggtgagatacaa
gaaattgacttacaaggtgcaggggaaacggcaagaaattctatgtctatgactcgtgcc
cctggattacttacagatggagttcgaggtaatcctagcaatattccattttggcctggt
ggtttcgaagaacctaaagtgcctaaaagtgaagacatggataatatcgactttgagaag
gatttaaggacattagccaaaggatttagctcaggtttagaatttaaaagtgacaattgt
acaccaatcaattgcatgagatacgaagtagaagcttcaatattagaagaaactgaaaag
ttaataatcaataatgataatataaatttaatggctgttatacacgaggagggaaatttg
cttggttcatggtcttcagttgaagagccgaaaaaagaaagtgttcaagctgtggataac
aacattccctttatagacaattccattttacccaaagaaacaaatatacctgtcttgaaa
atatccgagacgcaaacagaccttacaaaggcagaatgggcagaacagctggatgtatct
gcaccagtaacagattttaacaaaagaatacctgatccagcaattacattcagttatgaa
ctagacacttttcagaagcaagctattcttaaattggaagagaacagcaatgtcttcgtt
gctgcacacacatcagcaggaaaaactactgttgctgaatatgctattgcattgagccaa
aagcatatgacaagagtaatttatacgtcccccataaaagctctgtcaaatcagaaatat
cgtgattttaagagaaaatttgaaagtgttgggttattaacaggtgatttgcaaataaat
caaactgcttcatgtctaatcatgacaacagagatcctacaatcaatgttgtattgtgca
tccgatgttttacgagatttagagtttgtcatatttgatgaagtgcattatataaataat
gaagataggggtcatgtatgggaagaaatagtcattcttttaccacagaatattaatata
gtaatgttatctgcgactgtaccaaatccaataatattcgcggattgggttggtcgcatc
aaaaagcgaaaaatgtatgtgattagcactttgaaaagaccaatacctctgttacattat
ttgtatactggcactgatggcaagactaaagatgataaattcttagttcttgatagcaac
agccaatttttattagatggatggtacaaagcgacaaatgcatccgataaaaagaaagac
aaaacttcaaaggactgtaggagaaaaattcagatgacgccgaaacaagaagaagtatta
tggagagcatttgtaagccatcttcagaacaatgatatgttacccgttgtcgtatttact
ctatcgaggaaacgctgtgatatgaatgctgccacattcagaaatctcgatttaacgacc
gcgagagagaaacatcaagtacatgtatttttccaacataacataaaacacctaaagggt
agcgacagagaattaccacaagtacttatgatgcaagagctcttggaaaagggtgtgggt
atacaccacagtggaatattaccaattttgagagagatcgtagaaatgttatttcaaagt
ggagttgttaagttactgttcgcgacagaaacttttgccatgggagttaacatgccggcg
cgcacagtggtgtttgattccatacgaaaatatgacggaaacaactttcgtactttattt
ccaactgaatatatacaaatggctggccgtgccggacgacgaggtcacgacactacgggt
actgttatagtgatgtgcagacacgacgtaccgcactttaatgacttgaaacctatgatg
tgcggtgaaccgcagacattggagtcgaaatttaaagtcacatattccatgcttcttaat
ctaagaagagtgaacgaatccgttaccgttgaagcgatgatgcgcaaatctttcaaggaa
tcgccgttggcttcgcaagaagcgtcatataacaacgaattacggaaaatcgaacgcgaa
ttatcgaatttgccgcctttgaccgaaattcaaaaaaaactctctacgttctatcaccaa
gcggtcgattatttagaagatgttaaattcctgaatccttatttgctcacctcaaagaaa
gcagcaaaaagtttaatcgagggcagagttttgttaatatcgtacacggatcattacaat
aaactagccttgttattgcaagttttatatcacaaaagctctgctcagtacaaagtcttg
atacttaaagacgcgaatgtatctacttccgaaattactgattttaaaagttctcagata
ttcgagaagtggtgcgagattattagcctaacgaaaaaggagatatttgtaccaaacatt
aatccgtcacacgaagttttgattctgtttccatggcatatattaaagataactaattgt
cagataaaaattgactgctctttggtattgaatgattgggaaaagaggcaaatctcacga
ttcaaaaacgacccaccgggacaaacgtgtcagacagcggttcaagaattgacttcttta
tcatttaatgcttctactaacgctcgcattctacaaccatatatcgagccctcatcgaaa
aatgattttcaattaagaatacaacatagaaacaaattaaaagctagtctgaacgacatg
aaatgtatggaaataccaaactttgaagaacaatttagacctgtatttgaacgaaatcat
cttgaagataaaaaacgacagcttcaacttaaactcagcgatgaaggaatggcgttatat
ccggattatctaaatatggtagcactcctcaaacactttaggtacatagataatgatgaa
agagtcgccctcaaagggagagtcgcgctgcaaatgggtagtaatgaactgctgataaca
gaattgattctaaaaaatgtgttaactgttctacaaccagcagaaatagcagcattacta
tcagcactgatcttccagcaacgcacggatgttgaacctcaactcacaccaactcttgct
aacgcttgtaaaataatgaacgaggtgcacgcggaattggaacatctagagcaatactat
caactgtcgacattactaccattgaatttcggcttagtggaagttgtctacgaatgggca
caggccaaatcattcgccgagatcatgaagatgaccgatgtccaagaaggaattatagtc
cgttgcatacagcaattaggcgaaacattacgagatgttaaaaatgcggctgtaaccata
ggtgacccgattttaaaagagaagatggaggaagcatcgaccgcgatcaaacgtgacata
gtgtttgctgcatccttatacacccaagactga
DBGET
integrated database retrieval system
