Trachymyrmex septentrionalis: 108749706
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Entry
108749706 CDS
T11226
Name
(RefSeq) uncharacterized protein LOC108749706 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108749706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsep03021
]
108749706
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108749706
Transcription machinery [BR:
tsep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108749706
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108749706
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
HEAT_MROH2B_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
108749706
NCBI-ProteinID:
XP_018344101
LinkDB
All DBs
Position
Unknown
AA seq
1896 aa
AA seq
DB search
MFSSTKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVETHLQKVRSD
IKLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPP
NKLFSLDVRVQSIDPAWPITAPPTSIPSGSIHVNPRFLSMPQQATTSIVPPVKLPPGEPV
TTTEAAMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKTEVVVSTA
HVAPTTETTTQAKPVAPVVPNQTSKQVAKQFPAAAASLLKNVGANSGPRIAPASSIAVAS
AKPVSRDPRLKPTSIIQDVVVPTADPRQRPGTTSPKEARSESQTQQVANTIVTSNQLKQQ
PSKSAVTINKLPANPGAGPDNTTLLNVMNNNNSDNNSNNKNFNSNINKDATSHRISQKKD
PRLNINSSANLNSNNSKNIQNLSVCSNNSSSVLSMGNRGSGGSDINKSKDSKSSNSRGSS
SLADKSSTSSKSSHRKLGNKSRSKQPQICPSKIPKVDRDSSPIRSKSREKDSGDSSPSSR
TSPQSFQASKSRKKNTKSRKRSPSPPYRIPRRNDAKSSSSLNNSGGVTEEEQSGSLIVSP
PHPPAFKEIRPNARQRNYVRRNKDDSLSPERSPVNAGNTQIAAEPTLESSSKDEDLRAPL
SLPGAAVSISEKKEDLDLRVLPPVNTNKRRSEECVEATPPKKTKAEKFDALFGNEDVDLR
TLTHPNAGRPPTPPPPVISGEDGKDGWAKLKTPTKNDRDKQVNNTDDKRDRDRNRDRLGR
LRLYNKLPDDPKERRRTLSNEEQDSRPGRRGRENDKPERNDDRNIEIIMKQAAEQLNQGS
ITKMQYNTLIQEVLHMSEDRKLRAAQRKEKEAGTVIWEKGINMDISGPGDRAATFSPSND
KEMIRNKEHPMPRNPNGPRWQNQPWQQPWAHPPGPPYGGPQGHFNSDMRPVGPWQNPRHF
GPMRPDYQYHSGFNHNMGPNPRLGPGMIGPIGPNGPIMSNLLPNGPMGPMGPLPNPPIPM
GCHPAMMMNNGPMPNLMTNMPPLTSGRNVSPNTSGKYDLEDNDHSYNNAVLKNPGSHSRE
LPPPDSKLLADIARDTMKSINIDNIPREIRYYGQIGVVFMNWDDPREIGFQDGIRRILID
EKDTITCAFNDQYKEFMYEGEVHRIKLGAPTRELYVDDCWYECYFGGMPITIELGGKKVS
VKLEGPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIEGKPHTLEFTDA
LQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRAGHVKITGMRGEGPIESPP
PVAPLLAQKPKVDAAPAPSQLPTVENESTSQDGTDFTSTSKPDLQLDILSSVLPSAMAPS
SGLSYQAEPVENPPAPAPTLPLNMSELFQRLVETGIVPNLTEQKKQEEEEKKESVITPVT
FDKPETLKIKQPAISTALYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDSARKA
HSRPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTAETEGMTTDDSPQETLQPSVPTGSD
EDSRCQVCHDAFEQFYNEEKEEWHLRPAVNYEDKNYHPLCLEDYKEKSSARALEKSALVL
EETVLEMEENKVECSEETPVDETKQEESDIEMSKKELESTENLNQVEVNMQQLLDSIVAS
EKKEESVDAENSEIPQDDTEEKTDNVENVNEESIEAVSEDAEQDAPTVNKEDESLGEGVT
IPFENIKIKEEPLDDDEQIDSEVFDFANVEIKEEPIEPEPDPEQIVNESSMVDTTYAAVK
SSIDGNVELDSTPPAIPAAPPRIKINITKPLNINKESEENKEKEKVAIEKERKLLEEKIE
QPLVPASIKPSLQGRKLSILPPVEKGQELSGLCSIM
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgtcgacaaagtccaaagaagttgcagatgagtacatctcatctctatctgat
cttactattaacagtaagccgcttatcaacatgctcaccatgctggctgaagataatatc
gaacatgcaccagcgatagtgcaagctgtcgagactcatctacaaaaggtgagaagtgac
atcaaattaccggtactctatctcatcgactcgattgtcaagaatgtgaatggagactat
ttgaatctcttcacgcagaacatagtaaacacattctgtggggtgtttgagaaggttgat
gagaatacaagagctagcatgtggaagttgcggcaaacgtggaatgatgtatttccacca
aataagttattttcattagatgtacgggtgcaaagtatcgatcctgcatggccaatcact
gccccacctactagcattccttcaggatctatacatgtcaatccaagatttctttcaatg
cctcaacaagccacaacgtcaatcgttccgcccgttaaattgccgccaggagaaccggta
acaacaacagaagcagccatgagagaacagctgctgaagaagcagcgagaattgttagaa
ttacaaaagaaaaaaatcgagttagagctgttgcaagctaaagcaagtttagagcaacag
cagaggcaacttgacaaacaagctggaagcttgaaaacggaagtggttgtgtccactgca
catgttgcgccaactacggaaacaacaacgcaagcgaaacccgtcgcacctgtagtgcca
aatcaaacttcaaaacaagtagcaaaacaatttccagcagcagcagcatcacttttgaag
aacgtaggagcaaacagtggtccacgaattgcaccagccagtagtatagcagttgcatca
gcgaagccagtctcgcgagatccacgtttgaagcccacttctattattcaggatgtggta
gtgccaacagcagacccacgacaacgaccgggtacgaccagtccgaaagaagcgcggagc
gaaagtcaaacgcagcaagtggcaaatacaattgtaacttcaaaccaattaaaacaacaa
ccttcgaaatcggctgtaactatcaacaagcttccggccaatcccggcgccggacctgat
aatacaacgttattaaacgttatgaataacaataattctgataataatagcaataataaa
aattttaatagtaatataaataaagatgctacctcgcatcgcataagtcaaaagaaagat
cctagattaaatattaatagtagtgctaacctaaacagtaacaactccaagaacattcag
aatttatcggtttgcagtaataattcgtcttcagtattatcaatgggaaatcgaggaagt
ggaggtagtgacatcaacaagtcaaaagattcgaagagctcaaattcgcgcggctcttcc
tctttggctgacaagtcttccacttcctccaaatcttcgcataggaaattaggcaataag
tcgcgatctaaacagcctcagatatgtccgagtaagattccgaaagtcgacagagactcg
agtccgattagatcaaaatctcgtgaaaaagacagcggagacagttcaccgtcctcacgt
acctctccacaatccttccaagcctctaaaagccgtaagaagaacacaaaatcgagaaag
cgtagtccaagtcctccgtatagaatccccaggcgtaacgacgcgaaatcgagctcgagc
ttgaataattccggtggtgttactgaggaggagcaatctggttcattaatagtatctcct
cctcatccacccgcattcaaagagatcagaccgaacgctagacagagaaattatgtaaga
cgaaataaagacgacagtcttagtccggaacgttctccagtcaatgctggaaatactcaa
atcgcagctgaaccaacattggaatcttctagcaaagacgaagatctcagggcaccacta
tctctacctggagccgctgtttctatatctgaaaagaaagaagatttagatctacgagta
ttaccacctgttaacactaacaaaagacgcagtgaggaatgtgtcgaggcgaccccacca
aagaaaactaaggctgaaaagtttgacgcattatttggtaatgaagacgtggatttgcgc
actttgacgcatcctaatgccggtcgacctccgacacctccaccgcctgtgatttccggg
gaggatgggaaagatggttgggcaaagttaaagacgcccacgaaaaatgacagagataag
caagttaataatactgatgataagcgcgaccgagatcgtaatagagataggttgggacgt
ctcagactctataataaacttccggacgatcctaaagagagaagaagaacgttatcgaac
gaggaacaggattccagaccaggacgtagaggtcgggagaatgataaacctgaaagaaat
gacgatagaaatattgagataataatgaagcaagctgccgaacagttgaatcagggatcg
attacgaaaatgcagtacaataccttgatacaagaggtgttacacatgagcgaagatcgg
aaattgcgagctgcgcagcgtaaggagaaagaggctggcacagtgatatgggaaaagggt
attaatatggacatatctggtcccggagatcgcgccgcaacgttcagcccgtccaatgat
aaggaaatgatacgaaacaaggaacacccaatgccacgaaatccgaatggtccaagatgg
cagaatcagccgtggcaacaaccttgggcgcatccgccgggaccaccatacggtgggccg
cagggacacttcaattcggacatgagacctgtcggtccttggcagaatccgcgacacttc
gggccaatgcgaccggattaccagtatcatagcggctttaatcacaatatgggccctaac
ccgcgcttaggacctggtatgataggtccgataggtccaaatggaccgatcatgtcgaat
cttttgccgaatggtccaatgggaccaatgggacctttgccaaatcctcctataccgatg
ggatgtcaccctgcgatgatgatgaacaacggaccaatgcctaatcttatgacgaatatg
ccaccattaacgtctggtagaaacgtatcaccgaacacatccggcaaatatgatcttgag
gataatgatcacagttacaataacgcagtgttaaagaatcctggctcacatagtcgcgaa
ttgccgcctccggattcaaaactgttggctgacatcgcgagagacactatgaagtctata
aatattgacaatataccgcgagagattcgttattacggacaaatcggtgtagtgttcatg
aactgggatgatccacgggagatcggtttccaggacggtataagaagaatattgattgac
gagaaagacactataacttgtgcatttaatgaccaatataaggagttcatgtacgaagga
gaagtacatagaattaaacttggagcacctactcgagaattgtatgtcgacgattgctgg
tatgagtgttactttggtggtatgccaataacaatcgaactcggtggcaagaaagtcagt
gtaaagttggagggtcctcctccacaagtcaaaatcggcactgtaaagcgaacggatctc
gtggttgcgaaaattaatcttattatcaacgcgcgaaatatggtgccggtatttttagat
gcaaaaccacagatattcgaaatcgagggaaagcctcatactttagaatttacagatgca
ttgcagacagttctgctaaatggacgaccatttaaagtcgaatttggagggttacctaaa
cctattattgttagagacaagaagcattttatcagattttcagtattgcctagaggagtg
cgtgctggtcatgttaaaattaccggaatgagaggtgaaggtcccatcgaatcgccgcca
ccggtggcacctttgctggctcaaaaaccgaaagtagacgctgctcctgcgccaagtcaa
ttgcccactgtagaaaatgaatccacgtcgcaagatggtacagattttacttctacttca
aaaccagacctgcaattagatatcttatcatcagttttaccatcagcgatggcgccgtca
tccggtttgtcgtatcaagccgaacctgtagaaaatccgccagcaccagcaccgacgttg
ccactgaacatgagcgaattattccaaagattggtcgaaactggtattgttccaaatctc
acagaacaaaagaaacaagaagaagaagagaagaaagaatctgtgattactccagtcacc
ttcgataaaccggaaactcttaagattaaacaaccagcaatttcaacagcattgtacagt
ggtatgcaatgtagttcttgtggtgctagattcgcacctgagttagctactcggtacagc
caccatctggattggcacttcagacagaacaggcgtgaacgtgactctgcgagaaaagcg
cattctcgaccatggtattatgacgtcagcgattggatacagttcgaggagatcgaagat
ttggaagacagagcacaaagctggttcgagactgagaaacaaacagcggaaacggaaggt
atgactactgatgattcgcctcaagaaacattgcagcccagcgtaccaactggcagcgat
gaggattcgcgatgtcaagtatgccatgacgcatttgagcaattctataatgaggaaaag
gaggaatggcatttgagaccagcggttaattacgaggacaagaattaccatccgctctgt
ttagaagattataaggaaaaaagttcagcgagagcattagagaagtcagctttggtgctt
gaagagaccgttttagaaatggaagaaaataaagtagaatgttccgaagaaacgcccgta
gatgaaactaagcaggaagagtcagacatagaaatgtcgaaaaaagaactcgagtctacg
gagaatttaaatcaagtagaggtgaacatgcagcaacttttagattctattgttgcatca
gagaaaaaagaagaatctgttgatgcggaaaattccgaaattccgcaggacgatacggaa
gagaaaacagacaatgtagaaaacgtcaacgaagagagtatagaagctgtctcagaagac
gccgagcaagacgcgcctacggtaaataaagaagacgaatctctaggcgaaggtgtaaca
ataccttttgagaatattaaaattaaagaggaaccactagacgatgatgaacaaattgac
agcgaagtgtttgatttcgccaacgtggaaatcaaagaggaacctatagagcctgaacca
gatccagaacaaattgtaaatgaatcgagcatggtcgatacgacatatgctgcagtgaaa
agttccatcgacggaaacgtggagttggactccacaccaccagctattcccgcggctcca
ccacgaattaagattaacattactaagccgttgaacattaacaaagagtcagaagaaaat
aaagagaaggagaaagtagcaattgagaaggagagaaaattattagaggaaaagatagaa
cagccattagtgccagcttctattaagccaagtctacagggtaggaaactatcgatttta
ccccctgtagaaaaagggcaggaattatcgggactttgttctattatgtaa
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integrated database retrieval system
