Trachymyrmex septentrionalis: 108750084
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Entry
108750084 CDS
T11226
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03008
Ribosome biogenesis in eukaryotes
tsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108750084
09123 Folding, sorting and degradation
03018 RNA degradation
108750084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108750084
03009 Ribosome biogenesis [BR:
tsep03009
]
108750084
03016 Transfer RNA biogenesis [BR:
tsep03016
]
108750084
03036 Chromosome and associated proteins [BR:
tsep03036
]
108750084
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108750084
mRNA degradation factors
5'-3' decay
5' exonucleases
108750084
Ribosome biogenesis [BR:
tsep03009
]
Eukaryotic type
Pre-60S particles
RNases
108750084
Transfer RNA biogenesis [BR:
tsep03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108750084
Chromosome and associated proteins [BR:
tsep03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108750084
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
108750084
NCBI-ProteinID:
XP_018344823
UniProt:
A0A195FBV9
LinkDB
All DBs
Position
Unknown
AA seq
1679 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEVVKEHQIPEFDYLYLDMNGIIHTCSHPNDDVCFRISEEMIF
KNIFHYIEVLFNMIRPQKLFFMAIDGVAPRAKINQQRGRRFRAAKDAEVQEAKAKAKGIP
IPKEKRFDSNCITPGTLFMAKLGEQLKCFVEHKVSTDDAWKKCKILFSGSEVPGEGEHKI
MDYIRYMKANKDYNNDSSHCLYGLDADLIMLGLCSHEPNFSLLREEVKFGKQQVKMTPEE
TKFCLLHLSLLREYIEHEFSPIKDKLSFSFDIEKIIDDWVLMGFLVGNDFIPHLPNLHIA
NGALPILYRAYMEVLPTLEGYINEAGTLNLDRFEKFMERLSRLDVEQFNEQYADIKFFES
KTGRRPNESERHIYKKTEENESASPKKTQNKDLDALIKSTREMSLGNFDDDDIFIDYRNI
DLIVDDESDSEIYNMEFVQHKKDYYMNKLEYENVDEEVLRSQAEGYVRAIQWNLHYYYHG
CCSWSWYYPHHYAPYISDIKDFKDLKLEFDLGEPFLPFQQLLAVLPAFSKDLLPMAFQSL
LTEETSPIINYYPHNFKTDLNGKRQEWEAVVLIPFIDEKLLLAAMQPHLSRLTLEEQARN
KHGPMCLYSYTDESQSVHKTTIYFPEFTNHAQVKLMNREEIFVSKEQLIRGLSPGFDLDI
YYPGFPTLRHLDHSAHLEKARVKVFQQHSVLDSMILTLISKPIPNLTTLASELLGKSVYV
EWPHLKEVLVVGVSDCNMKLSLINQLGDYSHDNLKKEDVKGALSAEWNTLCKQVKELHMS
RLGIDIGDTNVLLYARVFLGNKYVFSVQGKVTVEKQWNDYAAAYAYQTVVKDISVYSKKL
PVYETMHDIFIPGTFCFMLGHPYYGAMGEVIYNKDGCKSRRIKISIKTMKEPTFDTIKQA
YGQQKTRYMPGSVAAQRLGINSHLLSRVTGTIYVIESSTIEVTKHNLGLNLKFNKRNEEV
PGYTRKENSQWLYSTKAIELIRNYMTKCPNLFERLTQNVANDIFQEEELFTKGSDELKDT
VAWLKTELNGLESRTCGMDVIEADLVKQIEEGVEEYLKTEEIMAKTVFLQVKPQLLYKPG
LHLRSVPPDPNSQNRLFDRILCVRSGFSVPLGTKGTIIGIRNGSNPIDTMYDVLFDKPFI
GGLTLNGCSQFRGYRLSTMDFINISFGERTEQGNVANELTESRKQTISSASPNKKNDQSS
KSYPQMQLAKKGLEKLNRDICMRMAQHGMEVNPKTVPKTLSQNAPPPNQTSEFQALWNEL
HKMQKPNGPPEKVTSSSTPRIKSYSNNHSVQSPQDPSAFLKAVLKIPDVNPQTSKQENTP
QPSTPQQSVPQQSMPQQSMPQQSIPQPAAMLQKATVSQKDQNPPPLVQQLFDRARQTEQK
KEKANAVWYSTQLLKHFSYNGTGMPKYNYIVDEKTGLISAHVMLMDNKIFKSDPCTTHEQ
ATESAAKKAYKALNLNKASMHDTKVAMTPQWFNTQQNNWIQNIRPPMIPPMGHLKIPPVP
LNMPPMQPNLFYPKWNPKLPPTPAFMQLASYSQSRQLQMKHQMQQNHQQKGPQNGSKMEI
RNSTAFVPLQAQKKSRNASVQQASKETNAKKSSSPSKTQQQPQKQKQEETLSKKQKPEVV
NKAREKITSNSESQIQPKQQLQLQQQPQQNTGKSSKPRKSRVAAKFGTQPLSNGGEPPQ
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgccgaaattcttcagatacataagcgagagatatccctgtctcagcgaggtc
gtgaaggaacatcagataccagaatttgattatttatatttggacatgaatggtattata
catacatgttcccatcccaacgacgacgtctgcttccgcatctctgaggagatgattttt
aaaaatatatttcactatatagaggtgctatttaacatgatccgcccacagaaattgttt
tttatggcgatcgatggcgtcgcgcccagagcaaaaatcaatcaacagaggggccggcgt
ttcagagctgctaaggatgccgaggtgcaagaagctaaagccaaggccaagggtattcca
atacccaaagaaaagagatttgactcgaattgcataaccccaggaacactttttatggct
aaattaggcgagcagcttaaatgttttgtcgaacacaaggtttctacagatgatgcttgg
aaaaaatgtaaaatattgttcagtggttctgaggtccctggagagggagagcacaagatt
atggattacataaggtacatgaaggcaaacaaggattacaacaatgattctagccattgt
ttgtatggtttggatgcagatttaataatgttaggcctttgttcacacgaaccaaatttc
tctcttttaagagaggaagtaaaatttggcaagcaacaagtgaaaatgaccccggaggaa
acaaagttctgccttcttcatttgtcacttttacgagagtacatagaacacgagttctcg
ccgatcaaggacaaattgtcgttttcgtttgatattgagaaaataattgatgactgggtt
ttaatgggttttctggtaggaaacgattttattccccacctgccaaatttacatattgcc
aacggtgcattgccaattctgtaccgtgcatatatggaggtattgccaacactagagggt
tatataaatgaagcgggaacattaaatcttgaccgttttgaaaagtttatggaaagactt
agccgtttagatgtagagcagtttaacgagcagtatgccgatataaagtttttcgaaagt
aagacaggtagaaggcccaacgaatctgaacgtcatatatataagaaaacagaagaaaat
gagagtgcatctccaaagaaaacacaaaataaagatttagatgcgcttatcaaaagtact
agggaaatgtccttaggtaattttgacgatgatgatatctttatagactatagaaatata
gatttgatagtagatgatgaatcggatagtgagatatataacatggaatttgtacaacat
aaaaaagattattatatgaacaagttagaatatgaaaacgtcgatgaagaagttttacgt
tcacaggctgaaggttatgtgagagcgatacaatggaatttgcattattattatcacggc
tgctgcagctggtcgtggtattatccacatcattacgctccatacatctcagatataaaa
gacttcaaagatttgaagttagaattcgacctaggagagccattcttaccttttcaacaa
ttgctagctgtgttaccagcatttagcaaagatttattaccaatggcatttcagtcacta
ctgacagaggaaacttctccgattattaattattatccacataattttaaaaccgattta
aatggaaaacgacaggaatgggaagcagttgtacttatcccatttattgatgaaaaacta
ttgttggctgctatgcagccacacttatcaagattaacacttgaagaacaagcaaggaat
aaacacgggccgatgtgtttgtactcgtatactgacgagagccaaagtgttcataagaca
acaatatactttccagaatttaccaatcatgctcaagtaaaattaatgaatcgcgaagaa
attttcgtttcgaaagaacaattaattagggggttatcccctggttttgatctcgacatt
tattatccaggatttcctacactacggcatttagatcattcagcgcatttggaaaaagcg
agggtcaaagtatttcagcaacattcagtcttggacagtatgattctaactctaatatca
aaaccaatacccaatttaacaactttagcatcagagctattaggaaaaagcgtatatgtg
gaatggcctcatttgaaagaagtccttgtagttggtgtatctgactgtaacatgaaactc
agtttaatcaatcaattaggcgattacagtcatgataatctgaagaaagaagatgtgaag
ggcgcgttatctgcagaatggaacacattatgcaaacaagttaaagaattacacatgtca
cgccttggaatagatattggcgatacaaatgtgttgctttatgctcgcgtgttcctgggc
aacaaatatgtttttagtgttcaaggaaaagttacggttgagaaacaatggaacgattac
gccgcagcttatgcttatcagactgtagtcaaagatatttctgtctacagtaaaaaattg
ccagtctacgaaactatgcatgatatttttataccaggaaccttttgtttcatgttggga
catccttattatggtgcaatgggagaggttatatacaataaagacggttgcaagtcacgc
agaatcaaaatttctataaaaaccatgaaggagccaacatttgataccattaaacaagct
tatgggcaacagaaaacgcgatatatgcctggcagtgttgccgcacaacgtcttggaata
aatagtcatcttttgagtagagttactggaacaatttatgttatagaatcatcaacgatt
gaagttactaaacataatcttggattgaatttaaaattcaataaaaggaatgaagaggtg
cccggttataccagaaaggaaaacagtcaatggttatatagtacaaaagcgatcgaactg
attcggaattacatgacgaaatgtcctaatttattcgaacgtttaactcagaatgtagca
aacgacatttttcaagaggaagagttattcacaaagggctcggatgaattgaaggataca
gttgcatggttgaaaacagaactaaacggtttagaaagtcgcacttgcgggatggatgtc
atcgaagcagacttggtcaaacaaatcgaggagggagtagaagaatatttgaaaactgaa
gagattatggcaaaaacggtctttctgcaagtgaagccgcaattactttataagccgggt
ttacacttgcgtagcgtgccgcccgatccgaattcccaaaatcgtttattcgatagaatt
ctctgcgtcagaagtggctttagcgtaccgctcggaactaaaggcactatcattggaata
cgaaacggaagcaatccaattgataccatgtacgacgttttgttcgataagccttttatc
ggcggacttacattaaacggttgctctcagtttcgcggttatcgtttgtcgactatggac
ttcataaatattagtttcggcgaaagaacggagcagggaaatgtagcgaatgaattgaca
gaaagtcggaagcaaacgatcagttctgcttctcctaacaagaaaaatgaccaatcgtcg
aagtcatatccgcaaatgcagctcgctaagaagggactcgaaaaattaaatcgtgatatt
tgtatgcgtatggcgcaacacggcatggaagtgaatcctaaaacagtaccgaaaacatta
tctcagaacgcaccaccgcctaatcaaacgtccgagtttcaagcgctgtggaatgaattg
cacaagatgcagaaaccgaatggaccaccagagaaagtgacatccagttcaacgccgaga
atcaagtcatacagcaacaatcacagcgtacaatcgccacaagatcctagcgcatttttg
aaagctgtgctaaagattcctgatgtaaatccgcaaacgagcaagcaagaaaatacgcct
caaccatctacgccgcaacaatctgtaccacaacaatctatgccacaacaatctatgcca
caacagtctataccgcaacccgcggcgatgcttcagaaagcgacggtctcgcagaaggat
cagaatcctccacctttagtacaacagttgttcgatcgtgctcgacaaacagaacagaaa
aaggagaaagcaaatgcagtctggtacagcacgcaattattgaaacatttctcatataac
ggaactggcatgccaaaatataattatattgtcgacgaaaaaacaggtttaatcagcgct
catgttatgcttatggacaataagatctttaagagcgatccttgtaccactcatgaacaa
gctacagaaagcgccgcaaaaaaagcatacaaggcgttaaatttgaacaaggcatcaatg
catgatacgaaagtagcaatgacgcctcagtggtttaacactcaacaaaacaattggatc
caaaatatccgacctcctatgatacctccaatgggtcatctgaaaataccgccagtcccg
ctgaatatgccgcctatgcagcctaacttattttatccaaaatggaatccaaaattacca
ccaactccagcgttcatgcaactcgcatcgtatagccaaagcaggcaattgcaaatgaaa
catcagatgcaacagaatcatcaacagaaaggtcctcagaatggatcaaagatggaaata
agaaatagcaccgcgttcgttccgttacaagctcagaaaaagagcagaaacgccagcgta
caacaagcctcgaaggagacgaatgctaagaagagctccagtccttcaaaaacgcaacag
caaccacaaaaacagaaacaagaggaaacgttatccaagaaacaaaagccggaagttgta
aataaggccagagagaagataacgtcaaatagcgagtcgcagatacaaccgaaacaacag
ctgcagctgcaacaacagccgcaacaaaacacagggaaatcgtccaagcccaggaaatca
cgtgtcgccgcaaaattcggcacacaacccttgtcgaacggtggtgaacctcctcagtga
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integrated database retrieval system
