Trachymyrmex septentrionalis: 108752849
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Entry
108752849 CDS
T11226
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108752849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108752849
Enzymes [BR:
tsep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108752849
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108752849
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108752849
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
108752849
NCBI-ProteinID:
XP_018349497
LinkDB
All DBs
Position
Unknown
AA seq
410 aa
AA seq
DB search
MALYGNGEPAGTNKLLTYMLDNLQVTANHPPQRPWIPLTRPNRTRPTCIFTVMCYNVLCD
KYATRQMYGYCPSWALDWEYRKKGILDEIRHYAADIISLQEVETDQFYNFFLPELKHDGY
DGIFSPKSRAKTMAENDRKYVDGCAIFYRTAKFSLIKEHLVEFNQLAMANAEGSDNMLNR
VMPKDNIGLAALLRTKEAAWDNGVPSDPAQVQQPILVCTAHIHWDPEFCDVKLIQTMMLS
NELRSILDQAGQSFRPGHKPDSSNVQLLLCGDFNSLPDSGVIEFLTSGRVAADHRDFKDL
AYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTFEFKGIIDYIFYSKQSMVPLG
LLGPLSPEWFKEHKVVGCPHPHVPSDHFPLLVELEMTPTVGTSNGLISRR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcgttatatggaaatggagaacctgcggggacgaacaagctgctgacatacatgttg
gacaacttacaagttacggccaatcatccgccccaaagaccatggattccattgacgagg
cccaataggacaagaccaacatgtatattcacggtgatgtgctataacgtgctgtgcgac
aagtatgcgacgcggcagatgtacggctactgcccgagctgggcgctggactgggagtac
cgaaaaaagggtatcctcgacgagatacggcactacgccgcggacatcatcagcctgcag
gaggtcgagacggaccaattctacaacttcttcctgccggagctcaagcacgacggttac
gacggcatattctcacccaagtcccgcgcgaagacgatggcggagaacgatcgcaagtac
gtcgacggctgcgccattttttacaggaccgccaaattttctttgataaaggagcattta
gttgaattcaatcaattggcgatggcaaacgcggagggttcagacaacatgttaaatcgt
gttatgccgaaagacaacattggattggctgcattacttaggactaaggaagccgcttgg
gataacggtgttccatctgacccggcacaggtgcaacaaccaattttagtttgtacggcg
cacattcattgggatcccgagttctgcgatgtaaaactaatacagacgatgatgctgagc
aatgaattacgttccattttggaccaagctggccagtctttcagacccggccacaagcct
gactcttccaacgttcaactgttgctttgtggcgacttcaattctttacctgattctggt
gtgatcgagtttcttacatccggacgcgtggcggccgatcatcgtgattttaaggattta
gcatataaatcgtgtttacaaaagatctctggctgcgataaacccaacgaattcacgcat
tctttcaagcttgcatccgcctatagcgaggacattatgccctacaccaactacacattc
gaatttaaaggcataatagattacattttctattcaaaacaaagtatggtaccgctgggc
ctcttgggtccgttgagcccagaatggtttaaagagcataaagtggtaggatgtcctcat
cctcatgttccatcggatcactttcctctgttagtggagttagagatgacaccgacagta
ggaacaagcaacggtttgatctcacgcaggtag
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