Trachymyrmex septentrionalis: 108753492
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Entry
108753492 CDS
T11226
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108753492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsep03041
]
108753492
Enzymes [BR:
tsep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108753492
Spliceosome [BR:
tsep03041
]
Complex A
U2 snRNP components
U2 related factors
108753492
Complex B
108753492
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
108753492
NCBI-ProteinID:
XP_018350588
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MVRSSDKDRHHRRRSRSRSRSRSAEPEKKRRRSRSRDRERERDKGRHRERRSRSRDRDRE
RSDRRERSERDRDRERKRGDSKEKRLTGSKSSRSGKERSNRSRSRDRKDKEKGDNEELPF
DHTKLDKEEEQKRLELEMQKRRERIERWRAERKKKELEATKKDGKTSILANLQLPMKKWS
LEDDSDEETPVVQNNKEAKEEGAKEEIEEVNEEVKDTEEEIDPLDAFMAEVQEEVRKVNK
FDGKAPKNANNGTNSASQSGGVVIVTGVAKKKVQKQKGELIEQNQDGLEYSSEEEGENLH
ETAAGIANKQKRELAKVDHATTEYQPFRKSFYVEVPEIARMTPEEVEVYKEELEGIRVKG
KGCPKPIKSWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTL
AFLLPMFRHILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTG
ISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVM
RIMENVRPDRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQ
KFYKLLEILGHYQDKGSTIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILD
FKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFIT
SEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFDESE
AALANEKKKFQKAALGLQDSDDEDIENDIDQQIESMLAPKRTVREIAKPTATSVTVPGQP
IPSATDKLELARRLASKINIAKNLGAEAKGATQQAAEAILKGAGPTNLITAKTVAEQLAA
KLNTKLNYQPREEDLVESDVETGEQTFRKYEEELEINDFPQQARWRVTSKEALAQISEYS
EAGLTVRGTYIAPGKMPPEGERKLYLAIESTSELAVSKAKAEVSRLIKEELIKLQASGAH
TASRGRYKVL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgaagtagcgacaaagacagacatcaccggcggagatcgaggtcgagatcgcga
tcgagatcggccgaacccgagaagaaacgacgtcgatctagaagcagggaccgtgagagg
gagagagataagggacgacatcgagagcggaggagtcgttcgagggatagagacagagag
aggagtgacagaagggaacgttccgagagggacagagatcgcgagagaaaacgtggagac
agtaaagaaaagcgtcttacaggctcaaaatcttcgcgctctggcaaagaacgatcgaac
aggtcccgttcccgtgatagaaaggataaagagaagggggacaatgaggaattacctttt
gatcacacaaaattagacaaggaggaagagcaaaaaaggctggaattggaaatgcaaaag
agaagagagaggatagaaagatggcgagcagaaaggaagaagaaagaactggaagcaacc
aaaaaagacggtaagacatctattttggcaaatcttcagctacccatgaaaaagtggtcc
cttgaggatgatagtgatgaagagactcctgtggtacagaataacaaggaagcaaaagaa
gaaggtgcaaaggaagaaattgaagaagtaaatgaagaggttaaagatacggaggaagag
attgatccacttgatgcttttatggcagaggtccaagaagaagtgagaaaagtgaataaa
tttgatggtaaagctccaaaaaatgccaacaatggcactaattctgcatcgcagagtggc
ggggtggtcatcgtaactggagtagctaagaaaaaagtgcaaaaacagaaaggagaattg
atcgaacaaaatcaagatggattggagtactctagcgaagaagagggcgagaatcttcac
gagactgcggccggtatagcaaacaaacagaagcgagaattggctaaagttgatcatgct
acaacagagtatcaacccttccgaaagtctttctatgttgaagtgcctgagatagcaaga
atgacaccagaagaagtggaagtgtacaaagaagaattagaaggcattcgcgtgaaaggt
aaaggttgcccaaaacctatcaaatcttgggcgcaatgtggcgtaactaagaaggaatta
gaagtattaaagaaactcggttatgagaaaccgacacctattcaatgccaggcgattcca
gcgatcatgtctggtcgcgatctcataggtatagcaaaaaccggtagcggaaaaacatta
gcttttcttttacctatgtttcggcatatactcgatcagccaccgttagccgatggtgac
ggaccaatcgcgttgattatgacaccaactagagaattgtgtatgcaaattggtagggat
tcgaagaaattcacaaaatcgctgggtctttcgcacgtgtgtgtctatggtggaaccggc
atttctgaacaaatagccgaacttaagagaggagctgaaatcatcgtgtgcacaccagga
aggatgattgacatgcttgctgctaacagcggacgagtaaccaatctacgtcgagtaacg
tatgtagtacttgatgaggccgacagaatgtttgatatgggtttcgaaccgcaggtgatg
cgaattatggaaaatgtaagaccggatagacaaacggtactgtttagtgcaacgttccca
cgacaaatggaggcgctagccagaagaatacttacgagaccagtcgaagtacaagtcggt
ggacgttctgtcgtttgcaaggatgtggagcagcatgtagttgtactcgaagaagatcag
aaattttataagttgcttgagatccttggacattatcaagacaaaggttccaccattata
ttcgtagacaagcaagagaatgcggacacgttactcaaggatcttatgaaagcttcgtat
tcctgcatgtctcttcacggcggtatagatcaatgcgacagagattcaaccatattggac
ttcaaagcaggacgaacaaaattgctcgtggccacatccgtcgccgctagaggtttggac
gttaaacatttggtattagttgtcaattatgattgtcctaatcactacgaagattatgta
catagatgtggtagaactggccgagctggaaataaaggatacgcatacacctttattaca
tcagagcaagaacgttacgctggtgatattttacgtgcgcacgagttagcgggcgtacct
gtcccagaacccttgcgccaattatgggaaggttacaaagcccgccaagccgcggatgga
aagaaggttcatactggaggtggtttcagtggcaaaggatttaagtttgacgaatcagag
gctgctttggcgaatgaaaagaagaaattccaaaaagcagccttgggactgcaagattcc
gatgacgaggacatagaaaacgatatcgaccaacagatcgagagcatgctagcgcctaag
cgaactgttcgtgaaattgcgaaaccaaccgcgaccagtgttacagtgcccggtcaacct
attcctagtgccactgataaactcgaattggccagaagactggcgtcgaagataaatatt
gcaaagaatctgggcgctgaagcaaaaggcgctactcaacaagcagcagaagccatacta
aagggtgcaggacctaccaatcttatcacggcaaagacagtcgcggaacaactagcagcg
aaactgaatactaagctgaattatcagccacgcgaggaagatctcgtagaaagtgatgtg
gaaacgggcgagcaaacattccgcaaatatgaagaggaactcgagatcaacgacttcccg
caacaagcgagatggcgagtcacaagcaaagaggctcttgctcaaatctcagaatattct
gaggcaggtctgacagtgagaggaacgtacatcgcacctggaaaaatgccaccagaagga
gagaggaagttatacctagcaatagaatcgacgagtgagttggcggtcagcaaggccaag
gcggaagtgtctcgactcatcaaggaagaacttatcaaactgcaagcgtctggtgctcac
accgcatcgcgaggtcgctataaagttttataa
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integrated database retrieval system
