Trachymyrmex septentrionalis: 108753707
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Entry
108753707 CDS
T11226
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03013
Nucleocytoplasmic transport
tsep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108753707
03015 mRNA surveillance pathway
108753707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108753707
Enzymes [BR:
tsep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108753707
5.6.2.5 RNA 5'-3' helicase
108753707
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108753707
mRNA cycle factors
Common to processing body (P body) and stress granule
108753707
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
NPHP3_N
ATPase
nSTAND3
SRP54
AAA_22
AAA_16
nSTAND_NTPase5
AAA_10
DUF7953
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
108753707
NCBI-ProteinID:
XP_018351059
UniProt:
A0A195EZE6
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDVTQTQSSQ
PVQVNGTNGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGF
IPAKADSVVVLLCRQPCAAQTSLKDMNWDQEQWKPLIEDRSFLSWLVKFPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQSALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNMPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGVTASA
RNKSGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacggtcccagcagccagaccctcacgttcctcgacaccgaggag
acggatttgatcggcgcggacactcagggcagcgagttcgacttcaccgacttcactctg
ccgtcgccgagtcagacccaggcttcgcagcacgacgtcactcagacgcagtccagtcaa
cccgttcaggttaatggaacaaatggtagctcgtcattagatttgaagatttctggagca
gcccagagtcttgctgaattgcaatttgaagaggaggaggaggaagcatactataaccgt
gatttacctgatcatgcatgtaaatattgcggtatccatgaagcatcctgtgtggttatg
tgcaacgtctgccggaaatggttttgcaatggacgcggcaatacgtcagggtctcacatt
atcaatcatcttgtccgtgctaaacacaaggaagtcactttacacagagatggccctctt
ggggagactgttttggaatgttattcctgtgctacaagaaatgttttcgtattgggcttt
attcctgctaaggctgattctgtagttgtattgctatgccgccagccatgtgcggcccag
acttctttgaaagatatgaattgggatcaagaacaatggaagcctttgattgaagatcgc
agctttttgtcttggttagtgaagttcccatctgaacaagaacagttgagagctagacaa
atctctgcgcaacagattaataaattggaggaattatggcgggacaatgttgatgctact
ttccaagatttagaaaaacctggagtggatgaggaaccgcagcaggttctattacgttac
gaagatggatatcagtatcaaaatatttttggcccacttgtgaaattggaagccgattac
gataaacgtttgaaagaatctcaaactcaagagaatattgaagtacgatgggacgtagga
ttgaacaagaagactatcgcgtactttatgctggcaaaaacggatggagatatgaaatta
atgcatggggatgaactgagacttcgttacctgggagaacttcacaagccttggtctggc
attgggcacgtaattaaaattcctgacaattatggggaagaagtcggaattgaactgaaa
aataattctggagcaccaacggaatgtattagcaactttgtcgttgactttatttggaag
agcacgagttttgatcgaatgcaatctgcgttacggaaatttgctgtggatgatacatct
gtatcagcttacatatatcacagattattaggacacgaagtagaagaggtcttgtttcgt
tgtcatcttcctaaacattttagcgcaccgaatctacctgacttaaatagatcacaagta
tatgctgtgaaacacgcgatacaacgacctttatctctgattcaaggaccacctggaaca
ggtaaaaccgtgacaagcgctactattgtatatcaattggtgaaacagaatggcggcccg
gttctcgtatgcgctccttcaaataccgctgttgatcaattgaccgagaaaatacataaa
tcaaatttgaaagtcgtacgattgtgtgccaaatcgcgagaggccatcgactcgccagtg
agtttcctcgcattacataatcaaataaaaaatatggagacaaacaccgagttgcaaaaa
ttacaacaactgaaagacgaaacgggcgaattgtcgagcgtcgacgagaagcggtataga
ctcttgaagaaagcggcggagaaagagcttctcgaagcggctgatgtaatttgttgcact
tgcgtcggcgctggtgatccgagattgcacagattaaaattccattccatacttatcgat
gagagcatgcaggctactgagccagagtgcatggtaccagttgttctaggagcgaagcaa
ttaatcctcgttggagatcattgccaattaggtccggtggtgatgtgcaagaaagccgct
agagccggtttatctcaatctctgtttgaaagattggtagtgttagggattaggccattc
cgcttagaagtacaatatcgtatgcatcctgatctttcgcgatttccttctaatttcttc
tatgaaggttctctgcagaatggcgtttgcgctgatgaaaggaaattattgaaaattgac
tttccctggcctgcaccagacaaaccgatgtttttctacgtaacacaaggtcaagaagag
atagctggaagtgggacatcttacttaaatcgtactgaagcatccaacgtggaaaagata
acgacgcgattcttacgttgcggtgtaaaaccagagcagattggagtgataaccccttac
gaaggtcaacgggcctatctcgtacaatatatgcagtaccaaggttctctacactcaaaa
ttatatcaagagattgaagtagcgagtgtggacgcttttcagggacgagaaaaggatatt
ataataatgtcctgtgtacgatccaacgaacatcagggcattggattcttgaacgatccc
agaagattgaacgtggcattgactcgggcaaaatatggcatcatcattgtaggaaatccc
aaagtgctttcgaagcaaccgctttggaatcacttgcttagcttttacaaggagcagaag
gtgctggtcgaaggaccgttgaacaatttgaaggagtccatgatacaattcgctaagcca
aagaaactcgtgaacgcagccaatccaggctcgcactttatgtccacgtcgatgtacgat
gcgcgcgaagccctgatccccggatcagtgtacgatcgttctggcactcaagtgaatggc
acgcaaaatcacaatccgtactaccaaagaaatgtgccgctcgacattttcagtcgtact
catgatactatcagctacatcagtccggaacgggcacaagcagcgatgaacaacatgccc
gtaccggttggtatgtttatgaacatggcacacgtgccgccgcgtttctacaatcagcac
cagcaagcattacaagcacgccagaatcaaagaaaccgacgcggtgtcactgcttcagca
aggaataaatcaggtccgcgtatgggtaaattgagtcaaaccgagcaaaacacacaaccg
tacagtcaaccgggtttgccactgacgcaaggcacaactcagggcatgtcccagcctggt
ttcagtctctcgcaacctggtctcagtcaggcagaactttctcaggactcgttcgcggtc
ggcgaattccagtcacagatggacggtctgttatcgcaggactcgacttaccaaggcgac
cgaagtggcttttatcagtcgggccagtcgcaagccggaggacagttctcacagccctac
tga
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