Trachymyrmex septentrionalis: 108754256
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Entry
108754256 CDS
T11226
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03020
RNA polymerase
tsep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108754256
09124 Replication and repair
03420 Nucleotide excision repair
108754256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsep03021
]
108754256
03400 DNA repair and recombination proteins [BR:
tsep03400
]
108754256
Enzymes [BR:
tsep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108754256
Transcription machinery [BR:
tsep03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108754256
DNA repair and recombination proteins [BR:
tsep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108754256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
108754256
NCBI-ProteinID:
XP_018351951
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MSNIFGLEDDQYDEEDKEEISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQR
IVEDSPQIELQAEAQHTTGEIEKPVKHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRN
LTYSAPLYVDITKTIEKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC
PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWI
NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEM
MEMVKPSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFC
ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL
YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS
TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ
PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII
VSEVSMVRDIRDREIRIYTDAGRISRPLLIVEGQNLLLQTRHINMLKERDYNNDGWQELV
GSGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDH
NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGI
NSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSRLT
CSGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFL
RNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF
SSEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQ
EYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPME
GRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE
CKGCKNKTQIAQIRLPYAAKLLFQELMAMNIAPRLMTL
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatattttcggtcttgaagacgatcaatatgatgaggaagataaagaagaaatc
tcgtcaaaactttggcaagaagcctgctggatcctcatcaacgcatactttgatgaaaaa
ggacttgtacgacaacaactggatagcttcgatgaatttattgaaatgtccgttcagcgt
attgtggaggattcaccacagattgaactacaggcggaggcgcagcacaccacaggcgag
atagaaaagcctgtgaagcatttgttgaaatttgagcagatttacctatcgaagccaact
cattgggaaaaagatggtgcaccatctcctatgatgcccaatgaagctagattgagaaat
ttaacatattccgcgccattgtacgtagatatcactaagacgatcgagaaggatggtgaa
gacccagttgagacgcaacatcaaaaaacatttataggcaaaattccgattatgttgaga
tcaaagtattgtttactcgccggcttatccgatcgtgatttgacggaattgaacgaatgc
ccgttggatcccggcggatattttattattaatggttcagagaaagtccttatagctcag
gaaaaaatggcgacgaacaccgtctacgtattcagtatgaaagacggtaagtatgcttac
aaggcggaaatacgctcatgcttggaacacagctcccgtccaacttcgactctatggatc
aatatgatggccaagagtggtgccagtattaaaaaatctgctataggccaacgcatcatc
gctattattccttacatcaagcaggaaattcccataatggtggtttttcgagcactcgga
tttgtggccgatcgcgatatcctcgaacatattatttatgatttcgacgaccctgagatg
atggaaatggtgaagccatccttagatgaagctttcgtcatacaggaacagaatgtcgct
ttgaattttatcggtactagaggtgccaagccaggagtaacaaaggagaagcgaattaaa
tacgcccgagagatcttacaaaaggaaatgctgcctcacgttggcataagcgatttctgt
gaaaccaagaaagcatatttcctcggctatatggtccatagattattgtcggcatctcta
ggacgaagggaattggacgaccgcgatcattacggtaataagagattggacttggccggg
cctctgttggcatttttgttccgaggtttgttcaagaacctaatgaaggaggtacgtctg
tacgcacagaagttcatagatcgagggaaggactttaatctcgagttggccatcaagaca
aaaattataacggacggtctgagatactcgcttgccactggtaattggggcgaccagaag
aaggcgcatcaggcgagagcaggtgtgtcacaggtattgaataggttgactttcgcttcg
acactgtcgcatctaagacgagtgaattcgcctattggaagagatggtaaacttgccaaa
ccacgtcaattgcacaacacgttatggggtatgctctgccccgcggagactcctgagggt
gctgctgtaggattagtaaaaaatctagccctgatggcgtatataagcgttggatcgcag
ccatctcctattctggaattcttggaggaatggtccatggagaatctagaagagatagca
ccgagcgcaatcgccgatgctacaaagatattcgtgaacggatgttgggtcggcatccac
cgagatccggatcaattgatggccactttacgcaaattgagaaggcagatggatattatc
gtgtcggaagtatcgatggttcgcgacattagagaccgtgagataagaatatacacggac
gctggtagaatcagtagacctttgctcatagtggaaggtcaaaatttattactgcagaca
agacatattaacatgttgaaggaaagagattacaacaatgacgggtggcaagaattggta
ggtagcggagtagtggaatatatagataccctggaggaagaaactgttatgatagctatg
tcacccgatgatctcagacaagagaaagagtacgcatattgtacgacgtacacgcactgc
gagattcatccagcgatgattttgggtgtgtgcgcttccattataccattccccgatcat
aatcagagtcctaggaacacttatcagagcgctatgggtaaacaagctatgggtgtatac
attacaaactttcacgtgcgcatggacactttggctcatgtactgtattatcctcataaa
ccattggttacaacaagatctatggaatatcttagatttcgcgaattaccagctggcatt
aacagcattgttgcaatcctgtgttacacgggatataatcaagaagacagcgttatcctg
aatgcgagtgcagttgagaggggtttcttcagatcggtgttttatcgttcttataaagaa
tccgagtcgaagaaaattggcgaccaggaggaacaattcgagaaaccctcgcgcttaact
tgttcaggaatgcgcaacgctatatatgacaaattggacgatgacgggatcattgcgcct
ggaattcgagtatctggtgatgatgtaatcataggaaaaacgataactttaccagaaacg
gatgacgaactggacagtacaacaaaacgttttacgaaacgtgacgcgtcgactttcttg
cgaaacagcgagaccggtattgttgatcaggtgatgttgacgttgaatagcgaaggatat
aaattctgcaagatccgagtgcgcagtgtacgtattccgcaaatcggcgacaaatttgcg
tcacgtcacggacaaaagggtacatgcggaattcagtacagacaagaagacatgcctttc
tcttccgaaggtcttacacccgacattattatcaatcctcacgctatcccttctcgtatg
actattggtcacttgattgaatgcattcaaggaaaagtttctgccaataaaggagagatt
ggtgacgctactccgtttaacgacgctgtgaatgtgcaaaagatttccacgcttttgcaa
gaatatggttatcatttgcgaggaaatgaagttatgtataacggacatacaggtcgtaaa
atcaacgcgcaagtctttttaggaccgacgtattatcaacgtttgaagcatatggtagac
gacaagatccatagtagagcaagaggacctgtgcaaattttagttagacaacctatggag
ggacgagcgagggatggtggacttcgttttggagagatggaacgagattgccaaatttct
cacggcgcagcacaatttctacgagaacgtttgtttgaagtatcggatccatatagaatt
cacatatgtaatttctgtggtttaattgctatagcaaatttgcggaataatactttcgaa
tgcaaaggttgtaaaaacaagacacaaattgcacaaattagactgccgtatgcggcaaag
ttacttttccaggaactaatggcaatgaatattgcacctagactcatgacactttga
DBGET
integrated database retrieval system
