Trachymyrmex septentrionalis: 108755289
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Entry
108755289 CDS
T11226
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03430
Mismatch repair
tsep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108755289
03460 Fanconi anemia pathway
108755289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsep03400
]
108755289
DNA repair and recombination proteins [BR:
tsep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
108755289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
108755289
NCBI-ProteinID:
XP_018353711
LinkDB
All DBs
Position
Unknown
AA seq
672 aa
AA seq
DB search
MDEPVATTEKSKKIEAINRETIHHICSGQVVLDLAIAIKELVENSLDSSATVIDVKLTDY
GKTCISVNDNGSGVLEQDFEGLGLKHHTSKLREFTDLIEVNTFGFRGEALSSLCALSELS
IVTRHASNEHGFKLEFDRNGVLTKKEPCAREKGTTIHVKNIFKNLPVRAKEFQKNLKKEY
ARAIQVLYSYCLVSTSVKITCSNLISGKLPKLIVATRNTDDVLSNVNSVFGKKSLDGIVK
LELQPPDETILQEYNLPNDITVDFDWECYVSTCSHAIGRSSPDRQFFYVNGRPCDLAKVS
KLINSVYHKYNNKQYPFVFFNLKLDRQCADVNVTPDKRTIFVTQERLILAILKFSLTVKW
DKLQGNFTVKALTELNFGLKRTISSSHTQPPAKRLQVSPSVSHIVKESDIQSNIKSMKKP
VDTEMVISIITIKEKLNEKVNIARMPASTSKRIKYRVQMEANQGEAEKELQKELTKDSFG
KMEIIGQFNLGFIIARLEDDLFIIDQHATDEKFRFEKLSNETKLKTQKLIVPKSLNFSAL
NETILIEHQQMFENNGFTFNINEQAEPSKKIELIGMPVSGYWQFGQEDIEELVFLIREAG
NENMDKHIYRPSRVKQMLASRACRSAVMIGTALNFSEMQRLITQMAQMQNPWSCPHGRPT
IRHLLSLLLINK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacctgttgcaacgactgaaaaatcgaagaagatagaagctataaacagagaa
acgatccatcatatctgttctggtcaggtggtgcttgatcttgcgattgcaattaaagag
ttagtggaaaacagtttggacagtagtgctacagtgattgatgttaaacttactgattat
ggtaaaacttgcattagtgtcaatgacaatggcagtggcgttttggaacaagactttgaa
ggcttaggcttaaaacatcacacctcaaagcttcgagaattcacagacttgattgaagta
aatacatttggcttccgtggcgaagcattgagctcattgtgtgccttgtccgaattgagc
atcgtcaccagacatgcatcgaatgaacatggttttaaattagaattcgaccggaacggt
gtgctcacaaagaaggaaccatgtgccagagaaaaaggtaccacgatacacgtgaagaat
atattcaaaaatctacctgtgagagcgaaggaatttcagaagaatctgaagaaagaatat
gcacgcgctattcaagtcttgtacagttactgcttagtatccaccagtgttaagattaca
tgttccaatttgatatcaggcaaattgcccaaacttatcgtggccactaggaacaccgac
gatgtactgagcaatgtcaattctgtgtttggcaagaagtctctggacggaatcgttaaa
ctcgaattacaacctccggatgaaacaatattgcaagaatacaatttgcccaatgacatt
acagtagatttcgattgggagtgttacgtgagcacttgcagccacgcaatcggacgttcc
tcacccgatcgacaatttttttatgtgaacggtcgaccgtgtgatctcgcgaaggtcagt
aaactgatcaatagtgtgtatcataaatataacaataaacagtatccgtttgtctttttt
aatttaaaattagaccggcaatgcgccgacgttaatgttactcctgataagaggacaata
tttgttacgcaagaacgccttatattagcgatactgaaattcagtttaacagtaaaatgg
gacaaactgcaagggaattttacagttaaggctttaacagagttaaattttggcttgaaa
aggacaatctcgtctagtcacacgcaaccgccagctaaaagattacaagtatcaccttcg
gtatcacatattgtgaaagaaagtgatattcaaagtaatatcaaatcaatgaaaaagcct
gtagatacagaaatggtgataagtataataacgataaaagaaaaattaaacgaaaaagta
aatattgctagaatgcctgccagtacatctaaaagaataaaatatagagtacaaatggaa
gctaatcaaggcgaagctgaaaaagaattgcaaaaagaattgacaaaagattcatttggc
aagatggagataataggtcagtttaatcttggtttcataatagctcgcttggaggatgat
ttatttattatcgaccaacatgccactgatgaaaaatttcgattcgagaaactcagtaat
gaaacgaagctgaaaacccagaagcttattgtaccaaaatcactaaatttctccgcattg
aatgaaacgatacttatagaacatcagcaaatgttcgaaaataatggatttacttttaat
atcaatgagcaagctgaacctagcaaaaaaatagaattaataggaatgcctgttagtggt
tattggcagtttggtcaagaggacattgaggaattagtattcctcattagagaagcaggc
aatgaaaacatggataagcatatatatcgtccgagtcgtgtcaagcaaatgttagcgtcc
agagcgtgtcgcagcgcagtcatgattggtacagcgttaaacttcagcgagatgcagaga
ctaataacgcaaatggcacaaatgcagaacccgtggagttgtccacatgggaggcctact
ataagacacctgttgtccttattactaataaacaaataa
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