Trachymyrmex septentrionalis: 108756090
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Entry
108756090 CDS
T11226
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108756090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108756090
Enzymes [BR:
tsep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108756090
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108756090
mRNA degradation factors
3'-5' decay
Pan complex
108756090
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
zf-CCCH_2
DNA_pol_A_exo1
DUF7563
Motif
Other DBs
NCBI-GeneID:
108756090
NCBI-ProteinID:
XP_018355154
LinkDB
All DBs
Position
Unknown
AA seq
1345 aa
AA seq
DB search
MDYPVLDLFDPSVEPTDHVNCEEEQDLLWDDCNYVVSGGEYVRATEQFGEDFSGAEFHET
RTLLADGGDRFGVSTATFDTIEELMWMGNQGGHVTSYYGPGLQKYTSFQVHATQEIRQIH
TVDEGILVLSQSQLRCQLRRGIPIFTHTSMNMNDMQCMLQISPARLLMGGHQDKIIDFNL
ARGKETGLVDVDENGCAILRQHSRLICAGNPAGRIDLRDPNTLSIEHTLDTHSGSLSDFD
VQGNYLVTCGFSNCRQGLTVDRFLMAYDLRQMRALSPVTTMVYPLLLKFLPSYSSRLAVV
SPLGQMQLLDTIYANVQPSVTCLYQVATGGATILSFDVAPTSQCLCFGDLAGSIHLMSTN
TPEPQFNTFSRPTEFADPIETIPSIPFDDDITPYSTIPMVYSDQPLLSDWPEEYLKKVYR
RTPSIDPEILRTMKMQGTIGYAPNPQAFRRNQIPYNLETGTSSRRGLVAKLFVGDSRSKT
DDGTFVAIPKRYRKIELKYSRLGYDDFDFDQYNRTSFCGLEATLPNSYCNAMLQLLYYCE
PVRVALLSHSCQREFCLSCELGFLFHMLDTSPGFPCQAANFLRAFRTVREASALGLILND
PESKKKINLIVLIQSWNRFILHQIHYEILETRKRQQKEEEAARLKSDSKYPPFVYNEQDF
PSILEDLGSRYRSHDDERKKKRKQEEDGKYMWITSKDKTTKKSAEDNEVRDDETEISRLF
GSEQMHIHRCLKCGQEATKHSIMLLCNLVYPEIINPSEEVPFTNVLARSLRPEKITPAWC
DNCQKFTPTLQSRQLTKLPQILALNCGLDTQQDKAFWQNQMDIVVQNVLTGKESSPNSSP
VPVTAKPCRYGNNCTRTGCRFRHIGRDSETEKLLTSSSTPSTSSTATVTSPPSHLYYLHS
WIPHNIEISIEENGEMTVKKISEPRSELNDMFIQTSMMENGQDDRTVQVISENSENNGEE
NIENCLASKIGNCNITEDDEAVKSTNLEISYNTQRIQYGLSAVVCYIDDKNNEERRNIVA
LLRVGPNYHERSAGNAVSQWYIFNDFCIQPVTPQEAVWFNLDWKVPCVLHYTAIPAPEPT
QFVSPLTYDVFGEDKCIARSGGTRGITFTPLASDEMPKKGELVGIDAEFVTLNQEESELR
SDGKMSTIKPSHMSVARITCIRGRQGPLEGTPFIDDYISTQEQVVDYLTKFSGIQPGDLD
ANFSSKHLTTLKSTYQKLRFLVDNGIIFVGHGLKNDFRVINLVVPPEQIVDTVLLFHLPH
HRMVSLRFLTWHFLGKNIQSETHDSTEDARAALELYRKYKELESFGTLTETLKELYEVGS
QLQWKVRIKILTFYIIKCHVYGRYL
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggactatccggtgttggatctcttcgatccctcggtagaacctacggaccacgtcaac
tgcgaggaggaacaagatctactttgggacgattgtaattatgtcgtatctggaggtgaa
tatgtacgtgcaacggagcagtttggagaggacttttccggagctgagtttcacgaaact
agaacattgctcgccgatggcggggatagatttggagtttccactgccactttcgacacg
attgaagaacttatgtggatgggaaatcaagggggtcacgtaacatcctactatgggcct
ggtttacaaaaatatacctcttttcaagtccatgcaacgcaggagatacgacaaattcat
actgtagatgagggtatcttagtgttgtctcaaagtcagttgagatgccaattgcggaga
ggcatacctatatttactcatacgtcgatgaatatgaacgatatgcaatgtatgttacaa
atttccccagccagattactcatgggtggacatcaggataaaataattgattttaacctt
gctagaggaaaagagactggattagtggatgtagatgagaatggttgtgcgatattgaga
caacatagtaggcttatatgtgctggaaatcctgcgggaagaatagatctcagggatcca
aatacattatcaatagaacatactttggatactcacagtggttccttaagtgatttcgat
gttcaaggaaattatcttgttacatgtggatttagtaactgtcgtcagggtcttactgtt
gatcgatttttaatggcctatgatttgagacaaatgagagcattaagtccagtcacaact
atggtatatcctcttttattaaagttcctaccaagttattccagtcggcttgcagtggta
tcgccgctaggacaaatgcaactacttgatacaatatatgctaatgtacaaccttcagtg
acgtgtttatatcaggttgctactggcggtgcgacgatattatcatttgatgtagcacct
acatctcaatgtctttgctttggagatttggcaggctctatacatttaatgtccaccaac
accccggaacctcaatttaatacattttctaggcctacggaatttgccgatccaattgag
acaataccatcgattccttttgatgacgatattacgccgtatagtacaataccaatggta
tattcagatcaaccacttctaagtgattggcctgaagaatacttgaaaaaagtttatagg
agaactccatcaatagatcctgaaatcttacgcacaatgaaaatgcagggaacaatagga
tacgcaccaaatcctcaggcttttcgcagaaatcaaataccgtacaatctggaaacgggt
acgtcttcacgacgtggcttagtcgcgaagcttttcgtgggggactcacggtctaaaaca
gatgacggcacctttgtagccatacctaagcgttatcgtaaaattgagttgaaatactca
cggcttggttacgatgatttcgattttgatcagtacaatcgaaccagcttttgcggtctg
gaggctacacttcctaacagttattgcaatgctatgctgcagttgctttactactgcgaa
cctgtaagggtagcattgctctcacattcgtgccaacgagagttttgtctttcttgcgaa
ttgggattcttatttcacatgctggatacatcaccaggatttccctgccaagctgcaaat
tttcttagggcttttaggacagtacgggaagcgtcagcattaggacttatactgaatgat
ccagaatcgaagaaaaagatcaatctgatagtgctcatacaaagctggaatagatttatt
ctacatcaaatacactacgagattctggaaaccaggaagcgacaacaaaaagaagaggaa
gcagcgcgacttaaatcagattccaaatatcctccatttgtttataacgaacaggatttt
cctagcatccttgaggacctcggttctcgatataggagtcacgatgatgagagaaaaaaa
aagaggaagcaagaggaggatggtaaatatatgtggatcacatcgaaagacaagaccacc
aaaaaatccgccgaagacaatgaagtgcgagatgatgaaacagagatcagtcgtctattt
ggatctgaacaaatgcacatacatcgttgtctcaaatgtgggcaagaagctacaaaacat
tctatcatgttactttgtaacttagtttacccggaaataattaatccttctgaagaggta
ccgttcacaaatgttcttgcccgcagtttaagacctgagaaaattacacccgcatggtgt
gacaattgtcagaaatttacacctactctccagtctcgacaattgactaaactacctcaa
atactggctctaaattgtggcttagatactcagcaggacaaagcgttttggcaaaatcaa
atggacatcgtagtgcaaaacgtgttgacgggaaaagagagcagtcccaactcgagtcct
gtgcctgttactgcgaagccctgtcgatatggcaataattgcacgcgaactggatgtcga
ttcaggcacattggacgcgactcagaaacagaaaaattattaacgtcgtcctccacacca
tctacctcatcgacagcgaccgttacatcgcctcctagtcatttatattacttgcattca
tggataccccacaacatagaaatctccattgaagaaaacggagaaatgacagttaaaaaa
atcagcgaaccaagaagcgagttgaatgatatgttcatacagacaagcatgatggagaac
ggtcaagatgacagaacagtacaagttatttctgaaaactctgaaaataacggtgaggaa
aatattgaaaattgtttagcatcgaagattggaaattgtaatataacagaagatgacgaa
gctgtaaaaagtacaaatctggagatctcttataatactcaaaggatacagtatggtctc
agtgctgttgtctgttatattgacgataaaaataacgaggaacggagaaatattgtagca
ctattacgagttggaccaaattatcatgaacgatcggcaggcaatgccgtatcgcaatgg
tatatttttaatgatttctgtatacaaccagtgactcctcaggaagcggtatggtttaat
ctcgattggaaagtgccgtgtgtactccattatacagcgatacctgctcctgagccaaca
cagtttgtcagtcctcttacatatgatgtttttggagaagataaatgtattgctcgcagt
ggtggaactagaggaattacatttactcctttagcatcagatgaaatgcctaagaaagga
gagttggtaggcatcgatgcagaattcgttaccttaaatcaggaagaatctgaactacga
agcgatggaaagatgtcaactataaaaccgagccatatgtcggtcgcgcgaatcacatgt
atccgcggtagacaaggtcctttggagggtacaccgtttatagacgattatataagcact
caggaacaggtggtcgactatctaacaaaatttagtggaatccaaccgggtgatttagat
gcgaattttagtagtaaacatctcacaactttgaaatcgacgtatcaaaagttgaggttc
ttagtggacaatggtataatttttgttgggcatggcctgaaaaacgattttagggtaata
aatttggtagtgccgccggaacaaatagtagatacagttttgttgtttcacttacctcat
catcgtatggtgtcgttacgtttcttgacctggcactttttgggtaaaaacattcagtct
gaaactcacgattcaaccgaagatgcgcgagcagctttagaattgtatcgcaagtacaaa
gaactagaaagttttggcacattgacagaaacattgaaagaactttacgaagtgggcagc
caattacaatggaaagtaagaataaaaattcttacattttacattattaaatgtcatgtc
tatggccggtatttatag
DBGET
integrated database retrieval system
