Trachymyrmex septentrionalis: 108756285
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Entry
108756285 CDS
T11226
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep04140
Autophagy - animal
tsep04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108756285
04148 Efferocytosis
108756285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsep04131
]
108756285
Membrane trafficking [BR:
tsep04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108756285
Hops complex
108756285
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
TPR_Vps41
zf-C3HC4_2
zf-RING_5
zf-RING_11
zf_RING_Vps8
zf-C3H2C3
zf-RING_2
zf-C3HC4
zf_RING_Vps8_fungal
zf-RING_Vps41
zf-RING_UBOX
COMP
zf-rbx1
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
108756285
NCBI-ProteinID:
XP_018355485
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MTSMFDQYEQASQRSKQVLAPPIRPDISTAGFIQMKLQDDGPIFTKQKVNFLPSDKILHL
VVSSNTIVIAMANNILLRIDMKQPDKTEEIDISKYALSMKMSGLFLDPLGHHLLITLVPR
HGENPLPELFYLYRKTTKLKQAGKFKGHEITAVGWNFSNASETSTGPILLGTSKGLIFET
EIGLETDKIFNTSLEQYWRQVFDIGKNSKPPITGIEFHKIPNSDKYVIIVTTLMRIYQYI
GAIGNPEEKPLLQQVFYRYLNAQETFNEVINSLSYSKMQFYYPSLGGLPKSFGWLTEAGI
LYAQVDAKPDTNNVLINQRMLTCPETSLMGSNGPQTTSIPLSFVLTEFHALLLYSDHVKG
ISLLNQELIFEDVYNDVVGKLIGITKDPATRSIWAYSERAVFKYKVTKEDRNVWQVYVDK
GEFELAKQYCKDNPAHIDQVLVKQAEMLFKNKEYEKSALIYADTHSSFEEISLKFLQEWQ
IEALKTFLRKKLDGLKTQDKTQITMIVIWVTELFMNQMGALRSSNTSYLHDMQYTELQKQ
FDSFLTIPKVEECIRRNRSTIYDLMASHGDKDNLIRLTIMHCNYEEVIRQHLYKNNYLEA
LGVLKSQNNKDLFYQFAGILLQELPRPTVAVLISQGSSLKPAKLLPALVSCNSDEKHAKE
IIKYLEFCVYKQGSQEQAIHNFLLSLYARYKQDEVMRYISSQGQDISMVHYDVHYALRLC
QEVGLTEACVQLSALLGLWITAVDLALTISVDLAKQIAAMPSDHDDELRKKLWLKIAEHV
VREKDDIQQAMEFLQHCDLVRIEDILPFFSDFVTIDHFKEAICNSLQEYNQHIQDLKEEM
QEATKAAELIRKDIQAFRTRCTFVHARDTCNTCEVQLLLRPFYVFPCGHKFHSDCLVAAL
TPMLSMDQRIKLADLQRQFTAISNRPEDTTSTTSVSLSTRDKIKTDIDELVASECLYCGE
LMIESIDKPFIEEEDYERIMKEWT
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaatgtttgatcagtacgagcaagcttctcagcgttccaagcaagtgttggca
ccaccaattcgtccagatattagcacagctggttttattcaaatgaaactacaagatgat
ggaccaatattcactaagcaaaaagtcaactttctgccatcggataaaattcttcattta
gttgttagcagtaacacaattgtaatagctatggctaacaatattttgttgcgtattgac
atgaaacaacctgataaaactgaagaaattgatatatccaaatatgcactaagcatgaaa
atgtccggcttgtttttggatccattgggtcatcacttgttgataacgctggtaccaagg
catggagagaatccacttccagaattgttctatttatacagaaagacaacaaaactcaaa
caggctggaaagttcaagggccacgaaatcaccgcagtgggttggaatttttctaatgct
tcggaaactagcaccggtcccattttactgggtacttcaaagggcctgatttttgagaca
gagattggcttagagactgacaagatttttaatacgagtttagagcagtattggcgtcag
gtatttgatataggaaaaaatagcaagcctccaatcactggaatagaattccacaaaatt
cctaattcggataaatacgtgatcatcgtaaccactcttatgcgcatttatcaatacatc
ggcgccattggcaatcctgaagagaagcctctcttgcaacaagtgttctacagatatttg
aatgcacaagagaccttcaacgaagtaataaattctttatcgtattcaaagatgcaattt
tattatccatcattgggcggcctgccaaaatcttttggatggctgacggaagctggtatc
ctgtacgctcaggtggacgcgaaaccggacacgaacaatgtgctgatcaaccaacggatg
ttgacgtgcccggaaacgagtctcatgggcagtaatggtccgcaaaccacttcgataccg
ttgtcttttgtgctgacggaattccatgcgctattgttgtattcagatcatgtgaagggc
atatcactgctaaatcaagaattgattttcgaagatgtttataacgacgtagtcggtaaa
ttaatcggcattaccaaagatccggcgacaagatcgatttgggcttatagcgagcgagct
gttttcaaatataaagtaacgaaggaagataggaatgtttggcaggtatatgtcgataaa
ggcgaatttgagttggctaagcaatattgtaaagataatccggcgcacatcgatcaagtg
ctcgtgaaacaagcggaaatgcttttcaagaataaagaatacgaaaaaagcgctctaata
tacgctgacactcattcgtctttcgaggaaatttcattgaaatttttgcaggaatggcaa
atcgaagcattgaaaacattcttacgcaagaaactcgacggtttgaagacacaagacaag
acgcagataacaatgattgtcatttgggtgacagagctgtttatgaatcaaatgggagct
cttcgcagtagcaatacatcctatcttcacgatatgcagtacacagaattgcagaaacaa
tttgacagcttcctcaccattccaaaagtcgaggaatgtatcaggagaaatcgcagcaca
atatacgatttaatggccagtcacggtgacaaagataatctgatacgtctgacaataatg
cactgcaattatgaggaagtgattcgtcaacatctgtacaaaaataactatttagaggcg
ctaggggtgcttaaaagtcagaataataaggatctcttctatcaattcgccggcatactg
ttacaagagttgccacggcctacggtggctgtcttgatttcgcaaggatcctcactgaag
ccagcaaagcttctgccagctctggtctcgtgcaacagtgacgagaaacacgcgaaagaa
attattaaatatttggagttttgcgtatacaaacagggttcacaagagcaagcaattcac
aattttcttttgtccctgtacgcacgttacaagcaggatgaagtaatgcgatatataagc
tctcaaggtcaagatatcagcatggtgcactacgatgtgcattacgcgctgcgattgtgt
caagaggtaggcttgacagaagcctgtgtgcaattgtcggctttactcggtctgtggatc
actgctgtagatcttgcgcttacaatcagtgtagatcttgccaagcagattgctgctatg
ccatctgatcatgatgacgaactgaggaaaaaactatggttgaagatagcggagcacgtg
gtacgagaaaaggacgacatacagcaagcaatggaatttttgcaacactgtgatttagtt
aggatagaagatattttaccctttttctccgatttcgtcacgattgatcatttcaaagaa
gctatttgcaattccctgcaggaatacaatcagcatattcaagatcttaaggaggaaatg
caggaagccacgaaagcagcagagctaatacgaaaggacattcaagccttcagaactaga
tgcacttttgtgcatgcgcgagacacgtgtaatacatgtgaggtgcaactattgctgaga
cctttctatgtatttccctgcggtcataaatttcacagtgattgtttagtggcagcatta
acaccaatgctatccatggatcagagaataaaattagcagatcttcagcgacagtttaca
gctatttcaaatcggcccgaagataccacttcgacgacctctgtatcattgtccacgaga
gacaaaatcaagactgatatcgatgagctggtcgcttcagagtgtctctactgcggagaa
cttatgatagaatcaatagataaaccatttattgaggaagaggattatgaacgtataatg
aaggaatggacgtaa
DBGET
integrated database retrieval system
