Trachymyrmex septentrionalis: 108756984
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Entry
108756984 CDS
T11226
Name
(RefSeq) tRNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsep Trachymyrmex septentrionalis
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsep03016
]
108756984
Enzymes [BR:
tsep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108756984
Transfer RNA biogenesis [BR:
tsep03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108756984
Prokaryotic type
tRNA splicing ligases
108756984
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
108756984
NCBI-ProteinID:
XP_018356704
LinkDB
All DBs
Position
Unknown
AA seq
515 aa
AA seq
DB search
MLTVFIVRKMVVRQYQEELKYLEKINECCWRIKKGFQPNMKVEGVFYVNNTLERLMFDEL
RNACRPGMVGGFLPGMKQIANVAALPGIVYRSVGLPDVHSGYGFAIGNMAAFDIDDPKSI
VSPGGVGFDINCGVRLLRTNLFERDVVPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEE
ALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAE
IQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETND
RQLACAHIKSQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYD
VSHNIAKIEEHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSY
VLTGTEQGMKETFGSTCHGAGRALSRAKSRRNLDYMQVLEKLEQLGISIRVASPKLVMEE
APESYKNVTDVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgttaaccgtattcatagtcagaaaaatggttgtaaggcaatatcaagaagagcttaaa
tatttggagaaaataaatgaatgttgttggagaatcaagaaaggttttcaacctaacatg
aaggttgaaggagtgttttatgtaaataacacattggagcgattaatgtttgatgagttg
cgcaatgcatgtcggccaggtatggttggaggcttccttcctgggatgaaacagattgct
aatgtggctgctttacctggtattgtatataggtctgtcggattaccagatgtacactct
ggatatggctttgctattggtaatatggcggcatttgatattgatgatccaaagtcaatt
gtatcacctggtggtgtaggctttgatattaattgtggtgtccgtttattacgaacaaat
ttattcgagagggacgtcgtaccagtaaaagaacaacttgcgcaaagtatgtttgatcac
attccagttggtgttggatctaaaggaattataccaatgaatgcacgggatttagaggaa
gcgttagaaatgggaatggattggtctttgagggaaggttacatttgggctgaagataaa
gaacattgtgaagaatatggaagaatgcttaacgcggatccatcaaaagtatcaatgaga
gctaagaaacgcggacttcctcaattaggtacattaggagctggaaaccattacgcagag
attcaagtagtagatgaaatatatgataaatgggctgcatgtaaaatgggtattgaagaa
aaaggacaaatttgtgttatgattcattcgggaagtagaggatttggtcatcaagttgct
acagatgcacttgtacaaatggaaaaagctatgaaacgtgacaatattgaaaccaatgac
aggcaacttgcatgtgctcatattaaatctcaagaaggtcaagattatttgaaagcaatg
gcagctgctgctaattttgcttgggttaatagaagttctatgacattccttagccgacag
gcatttgcaaaacaatttaactcgtctcccgacgatttagatatgcatgttatttatgat
gtgtctcataatattgccaaaatagaagaacatatagttgaaggaaaacaaaagacactt
ttagttcatagaaagggatcaacaagagcttttccaccacaccatcctttgattcctgta
gattatcagttaacaggtcaaccagttttaatcggtggtacaatgggtacatgcagttat
gttttgactgggacagaacagggtatgaaagaaacatttggatcgacatgtcatggtgcc
ggccgtgctctttcaagagcaaagtcacgtagaaacttggattacatgcaagttttggaa
aaattagaacaattaggtatatctattagagttgcttcaccaaaattggtcatggaagaa
gcaccagaatcctataaaaatgtaacggacgttgttaatacttgtcacgcagctggaatt
tcgaagaaatgcatcaaactgcggccaatcgcggttattaaaggataa
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