Trachymyrmex septentrionalis: 108757029
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Entry
108757029 CDS
T11226
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108757029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108757029
03041 Spliceosome [BR:
tsep03041
]
108757029
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108757029
Spliceosome [BR:
tsep03041
]
Complex B
Other components
Prp19-related factors
108757029
Complex C
108757029
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
PPR
TPR_10
NRDE-2
Mad3_BUB1_I
ARM_TT21_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
108757029
NCBI-ProteinID:
XP_018356780
LinkDB
All DBs
Position
Unknown
AA seq
842 aa
AA seq
DB search
MLERKDNEGNVYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTNSKNLNVVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCIIDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEE
CYITRTRQVFDRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIERLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVSTVRDFTQVFDAYAQFE
ELSLKKLIEEAARNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLYTLWVAFGKFYEENGQIEDARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDDNT
REICLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNQISDVTLDAMRLLDSKITSNADNAADVKGAIKF
VRGVTEKDGKSESHVNNPDEINIDIDDENDNDVEIEEDVPIEKQTIPSQVFGSLKAVQTE
ED
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagataacgaaggaaatgtatatgcctttaatgaggaggatttacca
tacgaagaagaaattttacgaaatccatattcagtcaaacattggcaacgatatattgac
catcttaaaagtacaaacagtaagaatttaaatgtggtatatgaacgagcattaaaagaa
cttccgggcagttacaagctatggtataattatcttcgacaacgtgtgagtcaactaaaa
ggtcgatgtataatagatccattgtacgaagatgttaataatgcatttgaacgagcttta
gtatttatgcataaaatgccacgtatatggatggattattgtactctaatgactgaagaa
tgttatataacacgaacgcgtcaagtgtttgatcggtctcttagagcgcttcctattacg
cagcatcatcgtatatggccattatatattcatttcttaaagaaacataatgtatatgag
actgctgttagagtctttagaagatacttaaagctagcaccagaagatacagaagaatat
attgaatatttaatatcaattgaaagactcgatgaggctgctgtaaaacttgcacagatc
gtcaaccaagacgattttgtatcaaagcatggaaagtctaatcatcaactgtggaatgaa
ttatgcgatttaatatcaaaaaatccttccaagataaagtctttgaatgtagatgctatt
attagaggcggtttaagacgttatacagatcaattgggacctttatggaattcattagca
gattattacgtacgaagtggcctctttgaaagggcgagggatatttatgaagaagctata
cagacagttagtactgtcagagattttacacaagttttcgatgcttatgcacaatttgaa
gaacttagtcttaagaaactcatagaagaagcagcaagaaatcctactgaagaagatgac
ataaagttagaattgagactggcgcgattggaacatctcatggaaaggagattattgtta
ctcaattctgtattgttacgacaaaatccacacaatgtagcagaatggcataaaagagta
aaactttatgaagggcaaccacatgagataattaatacatatacagaagcagttcagaca
gtgcaaccacagttagcagttggtaaactatatacattgtgggttgcgtttggcaaattt
tatgaggaaaatggacaaatagaagatgctagagtagtatttgaaaaagcaactcatgta
ccatataccaaagtagacgatcttgcttcagtatggtgtgaatgggcggaaatggaaatt
agacatgggaactgcaaagaagctttaaaactcatgcatcgtgccactacaatgccagct
agaaaagtagcatatcatgatgaaacggaaacggtacaaatgagattatacaaatcttta
aaagtatggtccatgtatgcagatttggaagaaagtttcggtacatttaagacttgtaaa
gcagtatatgacaaaataatcgatttgaaaattgcaactcctcaaattatcatcaattat
ggactgtttttggaagaaaataattactttgaggaagcatttagggcatatgaaaaaggt
attgcgctgttcaagtggcctaatgtttatgacatttggaatacgtacctcacaaaattt
ttaaaacgttacggtggtacaaaactggaacgtacaagagatctgtttgagcaatgttta
gaatattgtccaccaaagtatgccaaagctttatatttgttgtatgcaaagctagaagaa
gaacatggtttagcaagacatgccatgtctgtatatgaacgtgcgacgaatgctgtcctc
ccagaagaaagattcgacatgttcaatatatatatcaagaaagctgccgatatatatggt
gtaccaaaaactcggcaaatatatgaaaaggctatagaagtcttgaatgatgacaacaca
agagaaatatgtttacgatttgcagaaatggaaaccaaattaggagaagtagatagagcg
agagcgatatatgcgcattgtagccaaatatgtgatccaagggtcacgtccaacttttgg
caaatttggaaagaatttgaagtcagacatggaaatgaggacacaatgcgtgaaatgctt
cgaatcaaacgtagcgtgcaagctatgtataatactcaagtaaacatgatgtctgcacaa
atgttgaataatgcatccaatcaaatatcagatgttacattggatgctatgcgtttatta
gatagtaaaattacatcaaatgcagacaacgcagctgatgtcaaaggagctatcaaattt
gtacgtggtgtaacagaaaaagatgggaaatcagaatctcatgtgaataatccagatgag
attaatattgacatagatgacgaaaatgataatgatgtagaaatagaagaagatgtaccg
attgaaaaacagactataccatcacaagtatttggtagtttaaaagcagtccaaactgaa
gaggattga
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