Trachymyrmex septentrionalis: 108757085
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Entry
108757085 CDS
T11226
Name
(RefSeq) exosome complex exonuclease RRP42-like isoform X1
KO
K12589
exosome complex component RRP42
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108757085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsep03019
]
108757085
Messenger RNA biogenesis [BR:
tsep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108757085
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
108757085
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
108757085
NCBI-ProteinID:
XP_018356911
UniProt:
A0A195FRU4
LinkDB
All DBs
Position
Unknown
AA seq
292 aa
AA seq
DB search
MAETPLSLGEKTFIIHGVDLDLRNDGRSRYQYRPIEIETKLMKHTHGSARLRIGNITDVL
VGVKLEIDIPYAERPEEGKLEFFVDCSANATPAFEGKGGDDLATEISNVLSMAYQTPYAF
DLKQLCIIPHQKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVITATLDGGEPD
IQISDDPYDCIKLDVTNYPVVLTVCKIGDNFVIDPTSEEESCSTASILMSVMPNGKVTSV
VKLGYGSLLPSTLIKMLQVGKDISFKLNEALVKGLEEENKLGQTKPIFGFLR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaacccctttgagtttgggcgagaaaacattcattattcacggagttgatctt
gacctcagaaatgatggtcgatccaggtaccagtatcgtcctatcgagatcgaaaccaag
ctgatgaaacatactcatgggtcagcgagattacgtataggcaatattacagatgtatta
gttggtgtaaaacttgaaattgacataccgtatgctgaaagaccagaggaaggcaaatta
gaatttttcgtagactgttctgctaatgctacaccggctttcgaaggcaaaggtggggat
gatttggcgactgaaattagcaacgtcctttccatggcttatcagacaccatatgccttt
gatttgaagcagctgtgtataatacctcatcagaaatgttggaaaatgtacgtggacatt
ttgatccttcaatgcggtggaaatttattcgacgccgttggtgctgcggtgaaggcagcg
ttgtataatactgaaattccaagggtgatcacagccacactcgacggtggcgaaccagat
attcagatatcagacgatccttacgactgtattaaactagatgtgacaaattatccagta
gtactaacggtatgcaagattggtgataacttcgtgatagatccaacgtcggaagaagaa
tcttgcagtaccgctagtatccttatgtccgtgatgccgaacggcaaggtgacgtctgta
gtcaagttgggatacggcagcttgttgcctagtaccttgattaagatgttgcaggttgga
aaggatatcagtttcaagctaaacgaagctcttgtgaaaggattggaagaggaaaacaag
ctcggtcaaacgaaacccatatttggatttcttagataa
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