Thomasclavelia spiroformis: NQ543_02745
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Entry
NQ543_02745 CDS
T09467
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tsf
Thomasclavelia spiroformis
Pathway
tsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ543_02745 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsf03019
]
NQ543_02745 (rny)
Messenger RNA biogenesis [BR:
tsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ543_02745 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
dUTPase
Motif
Other DBs
NCBI-ProteinID:
UWO90184
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All DBs
Position
625440..626996
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AA seq
518 aa
AA seq
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MSDIDIVSILTYVLAVALGFFINYFINKLKISKANVSAAKIIDEATVKADNLVKEAILDA
KTEAYELKLQAEKEAKEQRQEINELENKLLQREQTIDRRDIAVQGREDVLAQKVVQIEKK
EAELGKLEAELKEKINAKVGELEKIAAMSANEAKQELFRQVEQQIATEMTAYIKEQEEEA
RSKASLISRDIIANAINRYSQEETVERTVSVVALPSEEMKGRIIGREGRNIKAIEQSTGV
DLIIDDTPEAITISCFDPVRREIARLSLETLIRDGRIQPGRIEEVVQKTKNELNEVIRKT
GEDAIFELGISKIDKDIIMMLGKLKYRTSYGQNALQHSLEVAHLAGIMAAELGLNQQLAR
RAGLLHDLGKAIDHEMQGSHVELGAKFAKKHGEHPVVVNAIESHHGDVPATSVISILVAA
ADTLSAARPGSRSETIENYIQRLEKLEEMAKSFDGVDRVFAIQAGREIRIVVKPDKVDDL
MAHKIARDIKTKIEEELTYPGHIKVTVIREVRANEIAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatattgatattgtttctattttaacctatgttctagctgtagctttaggtttt
tttattaattattttataaataaattaaaaatttctaaagcaaacgtaagtgctgcaaaa
attatagatgaagcaactgttaaagctgataatcttgtaaaagaagcgattttagatgct
aaaacagaagcatatgagttaaaacttcaagctgaaaaagaagctaaagagcaaagacaa
gaaattaatgaacttgaaaataaacttttacaaagagaacaaactattgatagaagggat
attgctgttcaaggtagagaagatgttttagcacaaaaagtagtacaaatagaaaaaaaa
gaagcggaattagggaaactagaagctgaattaaaagagaaaattaatgccaaagtaggt
gaattagaaaaaattgctgctatgtcagcgaacgaagctaaacaggaattgtttagacaa
gttgaacaacaaattgcaacagaaatgacggcatatataaaagaacaagaagaggaggct
agatcaaaagctagtttaatttctcgtgatataattgctaatgcaattaaccgttattct
caagaagaaactgtagaaagaactgtttctgtagttgctttacctagcgaggaaatgaaa
ggaagaattataggtagagaaggtagaaatattaaagcgattgaacaatctactggagtt
gatttaattattgatgatactcctgaggcaataactatttcatgttttgatccagtacgt
cgtgaaatagcgagattgtcattagagactttgatccgagatggacgtattcaacctggt
agaattgaagaagttgttcaaaaaacaaagaatgaattaaatgaagtaattagaaaaact
ggggaagatgcgatatttgaattaggtatttctaaaattgataaagatattattatgatg
ttaggaaaattaaaatatcgtactagttatggtcaaaatgctttacaacattcattggaa
gtagcgcatttagcaggaataatggctgctgaattaggcttgaatcaacaattagcaaga
cgtgcaggattgctacatgatttaggaaaggcaatagaccatgagatgcaaggtagccac
gttgaattaggagctaagtttgctaaaaagcatggagaacatcctgtagttgtaaatgca
attgaatcgcatcatggtgatgtacctgcaactagtgtcatttcaattttagttgctgct
gctgatacattgagtgctgcacgaccaggaagtaggagtgaaacaattgaaaattatatt
caacggttggaaaaacttgaagaaatggcaaaaagttttgatggtgtagatcgtgtattt
gcaattcaagctggccgagaaatacgtattgtagttaaacctgataaggttgatgattta
atggcacataaaattgctcgtgacattaaaacaaaaattgaagaagaacttacatatcct
ggacatattaaagtaacggtgatacgtgaagttcgtgccaatgaaatagctaaataa
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