Thomasclavelia spiroformis: NQ543_03650
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Entry
NQ543_03650 CDS
T09467
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tsf
Thomasclavelia spiroformis
Brite
KEGG Orthology (KO) [BR:
tsf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NQ543_03650 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsf03021
]
NQ543_03650 (rpoD)
Transcription machinery [BR:
tsf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NQ543_03650 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Skp1
Motif
Other DBs
NCBI-ProteinID:
UWO90353
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All DBs
Position
811746..812993
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AA seq
415 aa
AA seq
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MKKKNVTAVSFDDLKKIVLNDAKNGDGILTQDQIDTYLSTYDLSDDLAEDLLEFIGNNDI
IISDDGLDDIDVEDDMLLTGAADDLDIDLDLGDDLLGDDTPDLDFDGDFDMMTSDTLHMY
QVADADAEMDKNQLGSNVKINDPVKMYLKEIGRVELLSHDDEIKLAKKILEGDEAAKKEL
AAANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYTKGFKFSTYATWWIRQAI
TRAIADQARTIRIPVHMVETINKLTRIQRLLIQELGREPTAEEIAERIDGMTPEKVREIQ
KISLEPVSLETPIGEEDDSHLGDFIEDEGVMSPDDYAANELLKDELNEVLLELTDREEKV
LRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKALRKLKHPSRSKRLKDFLDR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaaaatgttacagctgtatcatttgatgatttgaagaaaattgttttaaat
gatgctaaaaatggagatggaattttaactcaagatcaaattgatacttatttatctact
tacgatttaagtgacgatcttgcagaagatttattagagtttattggaaataatgatatt
attatttctgatgatggtttagatgatatcgatgttgaagatgatatgttactcacagga
gcagcagatgatctagatattgatcttgatttaggagatgatttattaggtgatgatact
ccagatttagattttgatggtgatttcgatatgatgactagtgatacacttcatatgtat
caagttgccgatgctgatgcagaaatggataaaaatcaattaggaagtaatgtcaagatt
aatgatccagtaaaaatgtatctaaaggaaattggccgtgtagagttattgtcacatgat
gatgaaattaaattagctaaaaagattttagaaggtgatgaagctgctaagaaagaattg
gctgctgctaacttacgtttagttgtttctattgctaaaagatatgttggacgtggaatg
ttatttttagacttgattcaagaaggtaatatgggattaatcaaagcagttgaaaaattt
gattatactaaaggatttaagttttcaacttatgctacttggtggattcgtcaagcaatt
actagagcaattgctgatcaagctagaactatcagaattcctgtacacatggtagaaact
atcaataaattaacaagaatacaacgtttgttaattcaagaattaggtcgtgagccaaca
gctgaagaaattgctgaaagaatagatggaatgacaccagaaaaagttcgtgaaattcaa
aaaatctcattagaacctgtttcattagaaacaccaattggagaagaagacgactctcat
ttaggagattttattgaagatgaaggtgtaatgtctcctgatgattacgctgcaaatgaa
ttattaaaagatgaattaaatgaagtattactagaacttactgatcgtgaagaaaaagta
ttacgtttgagatttggtttagatgacggacgtactagaacattagaagaagttggaaaa
gagtttagtgtaactagagaaagaattcgtcaaatcgaagcaaaagcattacgtaagtta
aaacacccttcacgttcaaaaagattgaaagattttttggatcgttaa
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