Thomasclavelia spiroformis: NQ543_06750
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Entry
NQ543_06750 CDS
T09467
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tsf
Thomasclavelia spiroformis
Pathway
tsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ543_06750 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsf03019
]
NQ543_06750 (pnp)
03016 Transfer RNA biogenesis [BR:
tsf03016
]
NQ543_06750 (pnp)
Enzymes [BR:
tsf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NQ543_06750 (pnp)
Messenger RNA biogenesis [BR:
tsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NQ543_06750 (pnp)
Transfer RNA biogenesis [BR:
tsf03016
]
Prokaryotic type
tRNA degradation factors
NQ543_06750 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
MJ0548_C
KH_DEAH11
OB_RRP5_4th
LPD3
SPATA25
Motif
Other DBs
NCBI-ProteinID:
UWO88703
LinkDB
All DBs
Position
complement(1444377..1446509)
Genome browser
AA seq
710 aa
AA seq
DB search
MSKQVFSMDFYGKNLSVEIGELAKQANGSVLVRYNDTVILSTVVAGKEPKDVDFFPLTVT
YEEKLYSVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQ
DASPEMAAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLERSLINLEVAGT
KDAINMVEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKLEIPLFELDSNL
VDEVTSRAKDQMVAAVSIPGKLERYGAIDALIEEVTNEYDNKEYENDDIKANVMKQVGII
LHDLEKDEVRRLITVEKIRPDGRRLDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATL
GAIGEHQKIDGLGLEDQKRFMHHYNFPPYSVGEVGRMGAPGRREIGHGALGERALAQVIP
GEDVFPYTIRVVSEVLESNGSSSQASICASSMALMAAGVPIKAPVAGVAMGLVKKGDDYT
ILTDIQGMEDHLGDMDFKVAGTDEGICALQMDIKIDGITKEILQEALAQAKVARREIMAN
MMAVINEPRKELSPYAPKVQMIKIGTDQIKSVIGQGGKTINEIIEQSDGVKIDIEQDGTV
IVYHHDQEAINKAIALIEKIVKKAKVGEVYDGKVVRVEDNYAFVNLFEGTDAFLHISDYN
HERIKKMSDVVKLGDILKVKVTKVDDKGKVNVSRKALLPKPVKKEEAKSE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacaagtgtttagtatggatttttatggtaaaaatctaagtgtggaaattgga
gaattggctaaacaagctaatggatcagtattagttagatacaatgatactgttattttg
tctactgttgttgcaggtaaagaaccaaaagatgttgatttttttccgttaacagtaaca
tatgaagaaaaattatattcagtaggaaaaattcctggtggatttttgaaaagagaaggt
cgtcctagtgaacatggaactttaacagctagaatgattgaccgcccaattagaccatta
tttgctgatggatttagaaatgaagtgcaaagtgttaacacagttttgtcagttgatcaa
gatgcatcgccagaaatggcagctatgttgggggcatctttagcattatgtgtttctgat
attccatttaatggaccaattgcaggggttaatgttggattagttgatggtgaatttatt
gttaatggaacaccagaacaactagaaagatcattaatcaacttagaagtagcgggaact
aaagatgcaattaatatggttgaagctgatgctaaagaagttagtgaagaagtaatgctt
gaagcgttattatttggtcatgaaaaaatcaaagaattaattgcattccaagaaaaagta
gttgaagcttgtggtaaagaaaaattagaaattccgttatttgaactagatagtaattta
gttgatgaagtaacttctcgtgctaaagatcaaatggttgcagcagtatcaattcctggt
aaattagaaagatatggcgcaattgatgcattaatcgaagaagttacaaatgaatatgat
aataaagaatatgaaaatgatgatataaaagctaatgtaatgaaacaagtaggaatcatc
ttacatgatttagaaaaagatgaagtacgccgtttaattacagtagaaaagataagacct
gatggtcgtcgtttagatgaaatcagaccattagattcacaaattgatttacttcctcga
gtacatggatcagctttatttacacgtggagaaacacaagtattatcagttgcaacatta
ggagcaattggtgaacatcaaaaaatcgatggtttaggtttagaagatcaaaaacgtttc
atgcatcattataattttccaccatattcagttggtgaagtaggaagaatgggagcacca
gggcgtcgtgaaattggtcatggggcattaggtgaacgtgctttagctcaagtaattcca
ggtgaagatgttttcccatatacaattcgtgttgtatcagaagttttagaatcaaatggt
tcatcttctcaagcatcaatttgtgcttcatcaatggcattaatggcagctggagtacca
ataaaagcaccggtagctggtgtggcaatgggacttgtaaaaaaaggtgatgactatact
attttaactgacatccaaggtatggaagatcacttaggtgatatggactttaaagttgcg
ggaactgatgaaggtatttgtgctttacaaatggatattaaaattgatggtattactaaa
gaaatattacaagaagctttagctcaagctaaagtggcacgtagagaaattatggctaat
atgatggcggttattaatgaaccacgtaaagaattatcaccatatgcaccaaaagtacaa
atgatcaaaattggaacagatcaaatcaaatcagttattggtcaaggtggaaaaacaatt
aatgaaatcattgagcaatctgatggagttaagattgatattgaacaagatggtacagtg
attgtatatcatcatgatcaagaagcaattaacaaagcaattgctttaattgaaaagatt
gttaaaaaagctaaagttggtgaagtatatgatggaaaagttgttagagttgaagataat
tatgcttttgtaaatttatttgaaggaactgatgcattcttacatatttctgattacaat
catgaaagaattaaaaagatgtctgatgtagttaaacttggagatattttaaaagttaaa
gtcacaaaagttgatgataagggtaaagttaatgtttctagaaaagcactacttcctaaa
ccagtaaaaaaagaagaggcaaaatctgaataa
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