Thomasclavelia spiroformis: NQ543_07890
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Entry
NQ543_07890 CDS
T09467
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tsf
Thomasclavelia spiroformis
Pathway
tsf03410
Base excision repair
tsf03430
Mismatch repair
tsf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NQ543_07890 (recJ)
03430 Mismatch repair
NQ543_07890 (recJ)
03440 Homologous recombination
NQ543_07890 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsf03400
]
NQ543_07890 (recJ)
DNA repair and recombination proteins [BR:
tsf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NQ543_07890 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NQ543_07890 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQ543_07890 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UWO88916
LinkDB
All DBs
Position
complement(1660922..1662559)
Genome browser
AA seq
545 aa
AA seq
DB search
MRWQILNDLDYKHYMQEYKINSLLAKIFAYKNYSKPQVDSLLSNRLIYHDFSLFSEAQMT
LERIHEAIENNEKICIYGDYDCDGILATSILVEAFRQLGIEVGYHIPSRLQDGYGLNVTR
VEQMAAKGYSLIITVDNGIKANEAIDLANELGIDVIVTDHHSHDDNLPNAFSIIHTAISP
DYPYKPISGGFVAYKLASALLNRHDKYLFCLAAITTISDMMPLLDENRSLVKRALEFMKE
NKFPQLELLLGNNQKYNVTSIGFIIAPKINSFGRLGEIVNPNHLVKYFLQNASIGILQAV
SSKAIEINSKRQTMTNQQYQTVLASLDANDKFLYCYENEVHEGLIGLVAGKYTRQYNRPS
FVMSFDQDKKIYKGSARAIEGLSLNNIFKEVEDVLDSYGGHELAGGFSVSKENVENLKSR
LKVYLDEKLENYQPPLIDAIEVFGDEISKNSVKQLELLEPLGNGNEETYFYVKDLVVNKV
IQLSNGKHLRFDLDLAKAKVQALYFNQGKLYEQYKDAKTISLVGKFNINVFNNVETINII
IEEIK
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgaggtggcaaattttaaatgatttagactacaaacactatatgcaagaatataagata
aattcactattagctaaaatttttgcatataaaaattatagtaaaccccaagtagattca
ttactttcaaatcgtttgatctatcatgatttttcattattttcagaagctcaaatgaca
ttagaaagaattcatgaagcaattgaaaacaatgaaaaaatctgtatttatggtgactat
gattgtgatggaatattagcaacatccatcttagttgaagcttttagacaattagggata
gaagtaggttatcatatccctagtcgcttgcaagatggttatggcttaaatgttacgcgt
gttgaacaaatggcagctaagggatatagtttgattattacagttgataatggaattaaa
gctaatgaagcaattgatctagctaatgaactaggaattgatgttattgtaacggatcat
catagccatgatgataatttaccaaatgctttttcaatcattcatacagcaatttctcct
gattatccatataaaccaatttcagggggttttgtcgcttataaattagctagtgcccta
ttaaatagacacgataaatatttattttgtttagcggcgattactacaatatcggatatg
atgccattacttgatgaaaatcgttcattagttaaaagggctcttgaatttatgaaagaa
aataaatttccccaattagaattattgttaggaaataatcaaaaatataatgtgacaagt
atcggctttatcattgctcctaaaatcaattcatttggacgtcttggtgaaatagttaat
cctaatcatcttgttaaatattttctacaaaatgcctcaataggcattttacaagcagta
agtagcaaagcaattgaaatcaatagtaaaagacaaacgatgactaaccaacaatatcaa
acagtgttagcttcattagatgctaatgataagtttttatattgttatgaaaatgaggtt
catgaaggattaattggtttagtagcaggaaagtatacacgtcaatataaccgaccaagt
tttgttatgagttttgatcaagataaaaagatatataagggaagtgctagggcaattgaa
ggattatctttaaataatatttttaaagaagtagaagatgtgcttgatagttatggtggt
catgaattagctggaggttttagtgtcagtaaagaaaatgttgagaatttaaaatcgcgt
ttaaaggtatatttagatgaaaaattagaaaattatcaaccgcctttgattgatgcaatt
gaagtctttggtgatgaaataagtaaaaatagtgtaaaacaattggagctgcttgaaccg
ttaggtaatggcaatgaagaaacatatttttatgttaaagatttagtagtaaataaagtt
attcaattatctaacggtaaacatttacgttttgatcttgatttggctaaagcaaaagta
caagcattgtattttaatcaaggaaaactatatgaacaatataaagatgcaaaaactata
agtttagttggtaaatttaatattaatgtatttaataatgttgaaacgattaatattatt
attgaagaaattaaatag
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