Thomasclavelia spiroformis: NQ543_08650
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Entry
NQ543_08650 CDS
T09467
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
tsf
Thomasclavelia spiroformis
Brite
KEGG Orthology (KO) [BR:
tsf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsf03019
]
NQ543_08650
Messenger RNA biogenesis [BR:
tsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ543_08650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
CDC24_OB3
tRNA_anti_2
TraI_2
RMI2
Cas3_HD
SSB
Motif
Other DBs
NCBI-ProteinID:
UWO89034
LinkDB
All DBs
Position
complement(1783116..1784060)
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AA seq
314 aa
AA seq
DB search
MNKINELKPGDESVVIEALINRVVTGKTNGANRSTYLSMTLQDVTGLIDAKLWNATNEQV
ETLTVGSVVYVKGDIIKYNEDRQMKIIKIHVASNDPKEQIKYLKSAPKTGQELIGEIMKY
IDRIDNLKLNQLVKVLFKEHLDKLTIYPAASKNHHEYVSGLAHHTYSMLKIADALCSLYP
TLNKDLLFAGITLHDLGKIVELSGPVVPEYTIEGKLLGHISISQAMVKEMADKMNIEGEE
VTLLQHMILSHHGKNEFGSPVLPQVKEAEIIYLIDNMDARINMLEKALETIEPGSFSKRV
FALENRSFYKPKIG
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgaataagataaatgaattaaaaccaggcgatgaaagtgttgtaattgaagctttaatc
aatcgagttgtaacaggtaaaacaaatggagctaatcgttcaacatatttgagtatgaca
ttacaagatgttacaggattgatcgatgcaaaactttggaatgctactaatgaacaggtg
gaaactcttacagtaggaagtgttgtatatgttaaaggtgatattattaaatataatgag
gatcgacaaatgaaaattataaaaattcatgttgcatcaaatgatcctaaagaacaaata
aaatatttaaaaagtgctccaaaaactgggcaagaattaattggtgaaattatgaaatat
attgatcgtattgataatttaaaactaaatcaattggttaaagtattatttaaagaacat
cttgataaattaacaatttatcctgcagcgagtaaaaatcaccatgaatatgtatctgga
ttggctcatcatacgtatagtatgctaaaaattgctgacgccctatgtagtttataccct
acattaaataaagatttactttttgcagggattacattacacgatttaggaaaaattgtt
gagttaagcggtcctgttgtacctgaatatacgattgaaggtaaattgttggggcatatt
tcaatttcgcaagcaatggttaaagaaatggctgataagatgaatattgaaggtgaagaa
gttaccttattacaacatatgattttgtcacatcatggtaaaaatgaatttggttcacca
gtattaccacaagtaaaagaggctgagattatttatttgattgataatatggatgcgaga
attaatatgttagaaaaagctttagaaacaattgagccaggaagtttttctaaaagagtt
tttgcgttagaaaatagatctttttataagcctaaaataggttaa
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