Thomasclavelia spiroformis: NQ543_08720
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Entry
NQ543_08720 CDS
T09467
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsf
Thomasclavelia spiroformis
Pathway
tsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ543_08720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsf03019
]
NQ543_08720
03009 Ribosome biogenesis [BR:
tsf03009
]
NQ543_08720
Enzymes [BR:
tsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NQ543_08720
Messenger RNA biogenesis [BR:
tsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NQ543_08720
Ribosome biogenesis [BR:
tsf03009
]
Prokaryotic type
rRNA helicases
NQ543_08720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
NDK
Peptidase_M60
HTH_CLF_N
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
UWO89044
LinkDB
All DBs
Position
complement(1804126..1805721)
Genome browser
AA seq
531 aa
AA seq
DB search
MIENKFEQLGLSEEVLKAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGS
VLLSKIKPIDDRFPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSI
KKGVDIVVGTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQ
TILFSATMPAGIKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLID
VANIKTGIIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLVA
TDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQIE
RVTKSTITKVNVPTLQEIFEARIGALISDVEDVILAGNHKRFKQLVNEIDPTMLSDFTAA
LLYISYQEQLGYDYQRDVIQEINSKKYDRNNKNYTRLFLTVGTMDRVKVPQIIDFFITNA
GIRKDDIGDIDLKRKFTFVDIKKKVVNKVVKNCNKRKLNNRKVEIEIANRR
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaaataaatttgaacaattaggattaagtgaagaagtattaaaagcaattaaa
gatatgggtttttctaaaccctcacaaattcaagaaaaagcaattccaatattattgact
ggtgttgatgcgattggtcaagctcaaacaggaactggtaaaactttagcttttggtagt
gttttattatcaaaaataaaacctattgatgatagattccctcaagcaataattttgtca
ccaactagagaattagcaatgcaaattcatgaagaaatgaatcgtattggtaagcataat
ggaagcaaaatagtttgtgtgtttggtggaagtgatattgaaaaacaaattcgctcaata
aaaaaaggagtagatatagttgtaggaactccaggacgtgttatggatttaatgcgtcga
aaggttttaaagtttgacaatgtcaaatatgttgttttagatgaagctgatgaaatgttg
aatatgggctttgttgaagatattgaaacaatattagaaaaagttgatgatgctcgtcaa
acgatattattttcagcaacaatgccagctggaattaaaaagattgctcaaaattatatg
catgatgattttaaacatgtagcagtactttcaaaacaaactacggctacttctgtaaaa
caattttattatgaagtaaagccaaaagatcgttttgaaacattgtgtcgtttaatagat
gttgctaatattaaaacaggaattattttttgtcgtactaaacgtagtgtagatgaagta
actgaacaaatgcaacaatctaattataatgttgaagcaatgcatggtgatttgaatcaa
aatcatcgtatgaatacattacgtaagtttaaaaaagggacaattaatttcttagttgca
actgatgttgctgcaagagggatagatgttgaaaatgtaactcatgtaattaattatgaa
ttacctcaagatattgaatcatatgttcatcgaattggacgtacaggaagagctgataaa
gaaggtttagcttattcgataattagccctaaagaggtaagttttttaaaacaaattgag
cgagtaactaaatcaacgattacaaaagtaaatgttccaacattgcaagaaatttttgaa
gctagaattggggcattgattagtgatgttgaagatgttattttagctggtaaccataaa
agatttaaacaacttgtaaatgaaattgatccaacgatgttaagtgattttacagctgca
ctattatatataagttatcaagaacagcttggttatgattatcaacgtgatgtaattcaa
gaaataaattctaaaaagtatgatagaaataataaaaattatactagattatttttaact
gttggaacaatggatcgagttaaagttccgcaaattattgatttttttattactaatgca
ggaattagaaaagatgatattggtgatattgatttaaaacgtaaatttacgtttgttgat
attaagaaaaaagttgttaataaagtggttaaaaattgtaataaaagaaagcttaataat
cgtaaagttgaaattgaaattgcaaatagaagatag
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