Turicibacter sanguinis: HLK68_04305
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Entry
HLK68_04305 CDS
T06584
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsg
Turicibacter sanguinis
Pathway
tsg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HLK68_04305 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsg03400
]
HLK68_04305 (mfd)
Enzymes [BR:
tsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HLK68_04305 (mfd)
DNA repair and recombination proteins [BR:
tsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HLK68_04305 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
UB2H
Cas3-like_C_2
RecG_dom3_C
nSTAND_NTPase5
MAP3K_TRAF_bd
Endo_dU
ERCC3_RAD25_C
MFD_D3
DUF365
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QJS18512
LinkDB
All DBs
Position
complement(877547..881077)
Genome browser
AA seq
1176 aa
AA seq
DB search
MNVMNDYLLKSNELDSLMKTLEGEQRNILLSGVTSSFYGPLLQMIYEKQQRPVVILMQNL
YHAQRLYDQLSNLMDEGSVRLFPMDEFITAEMLASSSELRIERMNTLASILENEVKIVIT
HVAGATRFLTPKSIFEQAEIILECGHEYELDKLKRKLVELGYNSVRAVERMGEFSVRGGI
IDIFPMTEENPIRIEFFDDEVDSIRYFSTETQRSIHQIQKISIPPTYELVYSDKQVEVFE
AQIKSRLSKTLKLLDIETQDQLREKVFNDIENIKNHNNLEIMHKYISLLYENPDTLLSYF
TNPLVIYIDYNRIIENQNHMNEDALSWQEGAIINGKTVVDLNLYRPITEIEASTQLYLLE
HTSQLQDVKLTDTVKILTKSVSEFHGQLEFFAKECKRLKENKSTVFIAVSSVESRNKLAN
YLEESGIMVAIPTQPDEVREGSIHIIYEPLPLGFELIDSNIVVYTDYEINTKRKKQPTYK
SSFKEGKKIKDFNELKIGDYVVHVQHGIGQYIGIETLESNGARKDFLMIAYRGDDKLYVP
IDKIQMVQKYVGSEGAKPKINKLGTSEWEKTKAKVKKTVKDIADKLIKIYAQREHLPGYA
FSKDTIEQHAFENAFPYVETEDQLKAVTEIKEDMEQPHPMDRLLIGDVGYGKTEVAMRAA
FKAVMDGKQVAYLAPTTILTKQHYESFVSRFKEFPVKIGLLNRYVSLKEQQELLTNIKSG
KIDIVVGTHRLLSKDVKFKDLGLLIIDEEQRFGVEHKEKIKEFKTEVDVLTLTATPIPRT
LQMSMIGIRSLSLIETPPMNRYPVQTYVLEEHDGVIRDAIERELARDGQVFYLYNRVSDI
EKRAARIKKLVPDAIVEYAHGQMSKEQLEQTMADFEDKKFNVLVCTTIIETGIDIPNANT
LIISDSYRLGLSQLYQLRGRVGRSDRIAYAYCMYPKNKVLTENAEKRLQTIKEFTELGSG
FKIAMRDLAIRGAGDMLGAQQYGFIDTVGLDLYTQLLSEAVVHAREGSNFEVASFEMPKL
EFDFPTKVDAYIPDFYISDESTKIEIYQKIKNIKTQTEYDDIIDELIDRFGDFPDDVKYL
IDLTFLKNLTEPYLVKTKSTKNTIEFILKEEITQDIDGQKLFEAVHQIGSMIRLAYKENK
INIIFDLPAVKRLQWFEYALQLFTNFERFKKDVKKV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttatgaatgattacttgttaaagtcaaacgaattagattcgctgatgaagaca
cttgaaggggaacaaagaaatattttattaagtggtgtaacatcatcattttatggtccg
ttgttacaaatgatttatgaaaaacaacaacgtcctgttgttattttaatgcaaaattta
tatcatgctcaacgattatatgatcagttatcaaatttgatggacgagggttcagtccgt
ctttttcctatggatgaatttattacagccgagatgttagcttcaagttctgaacttaga
atagaacgtatgaatacgttagcttctattcttgagaatgaagtgaagattgtgattacc
catgtagcgggagccacgcgctttttaacgccaaaatcaatatttgaacaagcagaaatt
attctagagtgtggtcatgaatatgaattagataaattaaagcgtaaattagttgagctt
ggttataattcagtacgtgctgttgagaggatgggagagttcagtgttcgtggcggaatc
atagatattttcccgatgactgaggaaaatccaattcgtattgaattctttgatgatgaa
gtggattctattcgttatttttcaactgaaacacagcgttcaattcatcaaattcaaaaa
atttcgattccgccaacatatgaattggtatactcagataaacaagtagaggtatttgaa
gcacagattaaatctcgtttaagtaaaacattaaaattattagatattgagacgcaagat
caattgcgtgagaaggtatttaatgatattgagaatattaaaaatcataataatctcgaa
atcatgcacaaatacatttcattactttatgaaaatccagataccttattgtcgtatttt
acgaatccattggtgatttatattgattataaccgcattattgagaaccaaaatcatatg
aatgaagatgcactttcttggcaagaaggcgcaattattaatggtaaaacagttgttgat
ttaaatttatatcgcccgattacagaaattgaagcttcaacacagttatatctacttgag
catacaagccaattacaagatgttaaattgacggatacagtcaagattttaacaaagagt
gtttcagagtttcatggacagttggagttttttgctaaagagtgtaaacgattaaaagag
aataagagtactgtgtttattgcggtatcaagtgtagagagtcgtaataaattggctaat
tatctagaggaatcaggaattatggttgctattccaactcagcctgatgaggttagggaa
ggatcgattcatattatttatgagcctcttcctcttggatttgaattgattgactctaat
attgtcgtttataccgattatgaaattaatactaagcgtaaaaagcaaccaacttataaa
agttcatttaaagaaggcaagaaaattaaagattttaatgaacttaaaatcggtgattat
gtggttcatgttcaacacggaatcggacaatatattggaatcgagacgcttgaaagtaat
ggagctagaaaagatttcttaatgattgcttatcgtggagatgataaattatacgttcct
atcgataaaattcagatggttcaaaaatatgttggttctgaaggagcaaaaccaaagatt
aataaactgggaacatctgaatgggaaaaaacgaaagctaaagttaagaaaacagtaaaa
gatattgcagacaaattgattaaaatttatgcccaacgtgagcatttaccaggatatgct
ttttcaaaagatactatcgaacaacatgcatttgaaaatgcatttccttatgttgaaaca
gaagatcaattaaaggctgttactgaaattaaagaagatatggagcaacctcatccaatg
gatagattattaattggagatgttggatatggaaaaactgaggtagctatgcgtgctgca
tttaaagccgttatggatgggaaacaagttgcgtatttagcaccaactactattttaaca
aaacaacactatgagtcatttgtttctagatttaaggagtttccggttaaaattggtcta
ttaaaccgctatgtctcactaaaagaacaacaagaattgctaacaaatataaaaagtggt
aaaatagatatcgttgtcggaactcatcgattattatcgaaagatgtaaaattcaaagat
ttaggtcttttaattattgatgaggaacaacgatttggagttgaacataaagagaaaatc
aaagagtttaaaactgaagttgacgtcttaacgcttactgcaacgccgattccaaggaca
ttacaaatgtcgatgattggaattagaagtttatcgcttattgaaaccccaccaatgaat
cgctatccagtgcaaacttatgtacttgaagaacatgatggggtgattcgtgatgcaatc
gaacgtgaattagctagggatggacaagttttttatttatataacagggtttcagatata
gaaaagcgtgcggcacgaattaaaaaattagttccggatgcaattgttgaatatgctcat
ggccaaatgagtaaagagcaactcgaacaaacgatggctgattttgaggataaaaaattc
aacgttctagtctgtacaacaattatcgaaacagggattgatataccaaatgctaatact
ctgatcatatcagactcttatcgactggggttatcgcaactttatcagttacgaggacga
gtgggccgaagcgatcgtattgcatatgcctattgcatgtatccaaagaataaagtatta
acagaaaatgctgaaaaaaggttacaaaccattaaggaatttactgaacttggttcagga
tttaaaattgcaatgcgagatttagcaatacgaggtgctggagatatgctaggagcacaa
caatatggattcattgatacagttgggttagatttatacactcaattgttaagtgaagca
gttgtgcacgcaagagaaggtagcaactttgaagtcgcttcttttgaaatgccaaaatta
gaatttgactttccaacgaaagttgacgcttacataccagacttttacattagtgatgaa
tcaactaagattgagatttatcaaaaaattaaaaatattaaaacccaaactgaatatgat
gacatcatcgatgagttaattgatcgctttggtgatttcccagatgatgtgaaatattta
attgatttaacgtttttaaaaaatttaactgaaccttatcttgtgaaaacaaaatcgact
aaaaatacgatagaattcatattaaaggaagaaattacacaagatattgatggacagaaa
ttatttgaggctgttcatcaaattggttctatgattcgtttagcgtataaagagaataaa
ataaatattatttttgatttaccagctgtaaaaagacttcaatggtttgaatacgctttg
caactatttacaaatttcgaaagattcaaaaaagatgtaaaaaaggtataa
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integrated database retrieval system
