Turicibacter sanguinis: HLK68_04505
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Entry
HLK68_04505 CDS
T06584
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsg
Turicibacter sanguinis
Pathway
tsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLK68_04505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsg03019
]
HLK68_04505
03009 Ribosome biogenesis [BR:
tsg03009
]
HLK68_04505
Enzymes [BR:
tsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HLK68_04505
Messenger RNA biogenesis [BR:
tsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HLK68_04505
Ribosome biogenesis [BR:
tsg03009
]
Prokaryotic type
rRNA helicases
HLK68_04505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
CobA_CobO_BtuR
DUF1904
Motif
Other DBs
NCBI-ProteinID:
QJS18550
LinkDB
All DBs
Position
complement(917650..919266)
Genome browser
AA seq
538 aa
AA seq
DB search
MTEITFKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFML
PILEKIDPKNKNVQALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIRAL
KKGVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPESRQ
TVMFSATMAREIMNIAKTYQKNPEVVKVVSEELSNKKIDQYYVEVKRQDRVQAMIRCIDM
MGLTSSIVFTNTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNILVAT
DIAARGIDVSNVEAVFNYDIPLNEENYVHRIGRTGRAGMTGLSITFVFGKDMFRIRRIED
YTKTKMSKMPIPSVEEIQAKKSTNVIDEIVANLEGKDFSKENELIAAILEKGFTIEQVAA
GLLQMKIGQSTKKYAHIEEVTAGNPKAKGMRKNEVRLFVNVGSKQKVKAKDFVGMLTKKS
DIPARAIGDIDVYKKFTFINVDKAHANNIIRKLNSKLINGKPIRAEKTAPGAAMPKDR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaattacatttaaagatcttgctttatcaccatcaacattaaaagcaattgag
gagatcgggtacgttaaaccatcaccaatccaagcagaagcaatcccagtagtattagct
ggaaaagatattatcggacaagcacaaacaggaacagggaaaacggcagcatttatgtta
ccaatccttgaaaaaattgatcctaaaaataaaaatgttcaggcattagtattatgtcca
actcgtgagttagcggtacaggttcatgaagaatctaaaaaattctcacgtaacaaccgt
gatgttcacattttatcaatttatggaggacaatcatatgatcctcaaatccgcgcactt
aaaaaaggtgttcaaatcgttgtcggaactccaggacgagttatggaccacatgcgccgc
ggcactttaaaactagaaaacttaaaaatgttagttttagatgaagctgatgaaatgtta
aacatgggattcaaagatgatatcgaagaaatcttagaaaaaacacctgaatctcgtcaa
acagttatgttctcagcgacaatggctcgtgaaatcatgaacattgctaaaacttatcaa
aaaaatcctgaagtggttaaagtcgtttcagaagaattatcaaacaaaaaaatcgatcaa
tactacgttgaagttaaacgccaagaccgtgttcaagcgatgattcgttgtatcgatatg
atgggattaacttcttctatcgtcttcactaatactaaacgtgaagttgatgaattagtt
tctaaattacaagaagaaggttacgtaactgaagggttacacggagacttaaaacaagct
caacgtgaccgcgttatgaacagcttccgtcgtaaaaatgttaatatcttagttgcaact
gatatcgctgctcgtggtatcgacgtaagtaacgttgaagcagtattcaactacgatatc
ccattaaatgaagaaaactatgttcaccgtatcggacgtactggtcgtgcggggatgact
ggattatcaattacgtttgtattcggaaaagatatgttccgtatccgtcgtattgaagat
tacacaaaaacaaaaatgtctaaaatgccaattccatcagtagaagaaattcaagcgaaa
aaatctactaatgttattgacgaaatcgttgctaatttagaaggaaaagatttctctaaa
gaaaacgaattaatcgctgcaatcttagaaaaaggattcacaattgaacaagttgcggct
ggtttattacaaatgaaaattggtcaaagcactaagaaatatgctcatatcgaagaagtt
acagcaggtaatccaaaagctaaaggaatgcgtaaaaacgaagttcgtttattcgtaaac
gttggttctaagcaaaaagttaaggctaaagacttcgttggaatgttaactaaaaagtct
gatattcctgcacgtgcaatcggagatatcgacgtttataaaaaattcacattcattaat
gttgataaagcacacgctaataacattatccgtaaattaaactcaaaattaattaatggt
aaaccaattcgtgctgaaaaaacagctcctggtgcggcaatgcctaaagatcgctaa
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