Turicibacter sanguinis: HLK68_05530
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Entry
HLK68_05530 CDS
T06584
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsg
Turicibacter sanguinis
Pathway
tsg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HLK68_05530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsg03021
]
HLK68_05530 (rpoC)
03400 DNA repair and recombination proteins [BR:
tsg03400
]
HLK68_05530 (rpoC)
Enzymes [BR:
tsg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HLK68_05530 (rpoC)
Transcription machinery [BR:
tsg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HLK68_05530 (rpoC)
DNA repair and recombination proteins [BR:
tsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HLK68_05530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
ApbA_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QJS18746
LinkDB
All DBs
Position
1132819..1136532
Genome browser
AA seq
1237 aa
AA seq
DB search
MVDVNKFQYMKIGLASSDIIRKWSYGEVKKSETINYRTLKPEKDGLFCERIFGPTKDCEC
ACGKYKRIRHEGIVCDRCGVEVTVAKVRRERMGHIELAAPVAHIWYVKGIPSRMGLLLNM
SPRELEEVIYFVNYVVIDSGKTDLVKQKVLTEKEYREAYEKWGNAFQVGMGAEAIKKLLE
AIDLDKLAKELRAELKIAQGQKRGKIIKRLDVVESFRNSGNKPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLIRYLEIGAPNIIINNEKRMIQEAVDALVDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMYQCGLPKE
MALELFKPFVMKELVERDLAQNIKSAKKMIERMDDALWDVVEDVIREHPVLLNRAPTLHR
LGIQAFEPKIVEGRAIRLHPLVTTAFNADFDGDQMAVHVPLSQEAQAEARLLMLAANNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEEGAIGEGNIYKDTNELMMAYANGYVTLHSRIALD
ARTLNNMTFTEEQNNKYIVTTLGKVIFNGILPKTFPFLNEPTMSNLQTVTPAKYFVDKGT
NIKEYLKDVKVVSPFKKKFLGDIISEVFRIYKTTETSRMLDRLKDLGFKYSTIAGISVGV
ADVVVSSKKKDLLAEGDKKVAEIHEFYNRGLLTDDERYRLVIDVWAKVKDEIQHVLMNEL
PADNHIYMMSDSGARGNASNFTQLAGMRGLMANPSGKTIELPIKSSFREGLTVTEFFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDKGQYITEIKQRGQAVETLF
DRIVGRYTAKPVYHPETGALIMDRNEYISDDLAKVIVESGIEGIDIRTIYSCNATKGVCK
KCYGRNLATGKEVEVGEAVGIMAAQSIGEPGTQLTMRTFHTGGVAGADITQGLPRIQELF
EARNPKGRAIIAEIDGTITTIKANTKNRYEITLTNKLESRNYLLPYGVQPLVSEGDDVFA
GDMLTEGSIDPKELLRVKDVEAVQAYILKEVQNVYRAQGVELSDKHIEIMVHQMMKKVKV
IDGGDTDILPGSLIDVTHYTRVNGEAIARGKRPAVGIPTILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKVDELVGLKENVIIGKLIPAGTGVLREDYIQPVHKNVEVEDDDILAF
DLEDISLKSPASLIEEDLDDLVELDFDETDFIDAEEE
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
ttggtagatgttaacaaatttcagtatatgaaaatcggtttagcttcttctgatataatt
cgcaaatggtcttatggtgaagtgaaaaaatcagagacaattaactatcgtacactaaaa
cctgaaaaagatggtttgttctgtgagcgtatcttcggtccaacaaaggattgtgagtgt
gcttgtggaaaatataaacgtatacgtcatgaaggtattgtttgtgatcgttgcggagtt
gaagtaacagtagcaaaagttcgtcgcgagcgtatgggacacattgagcttgcggctcct
gttgctcatatttggtatgtaaaaggtattccaagtcgtatgggactattattaaatatg
tcaccacgcgaacttgaagaagttatttactttgtaaattatgttgtaattgattcaggt
aaaactgatttagttaaacaaaaagtattaactgaaaaagaataccgtgaagcatatgaa
aagtggggaaatgcattccaagttggtatgggtgctgaagccattaaaaaattattagag
gctattgatttagataaattagcgaaagaattacgtgcagaattaaaaattgcacaagga
caaaaacgtggtaaaattatcaaacgtttagatgtcgttgagtcatttagaaattctgga
aacaaaccagaatggatgattttagatgttttaccggtaattccacctgaattacgtcca
atggttcaattagatggtggtcgtttcgcgacatcagatttaaatgatttatatcgtcgt
gtaatcaaccgtaataaccgtttaattcgttatttagaaattggtgctcctaacattatc
attaataatgaaaaacgtatgatccaagaagcagttgatgctttagtggataatggtcgt
cgtggtcgtccagttacaggaccaggtaatcgtccattaaaatcattatctcatatgcta
aaaggtaaacaaggacgtttccgtcaaaacttattaggtaaacgtgttgactactctgga
cgttctgtaatcgttgtaggaccagacttaaagatgtatcaatgtggattaccaaaagaa
atggcacttgaattattcaaaccattcgtaatgaaagaattagttgaacgtgatttagct
caaaatattaaaagtgctaaaaaaatgattgagcgtatggatgatgctttatgggatgtt
gtagaagatgtaattcgtgaacacccagtattgttaaaccgtgccccaacattacaccgt
ttaggtattcaggcattcgaacctaaaattgttgaaggacgcgcaatccgtcttcaccct
cttgtaacgacagcattcaatgccgatttcgatggtgaccagatggcggttcacgttcct
ttatcacaagaagcacaagcagaagcccgtttgttaatgttagctgctaataatatctta
aacccgaaagatgggaaaccagttgttacaccatctcaggatatggtattaggaaactat
tatttaacgatggaagaagaaggtgctatcggtgaaggaaacatctataaagatacaaat
gaattaatgatggcatatgcaaatggatatgtaacattacattcacgtattgcattagat
gcacgcactttaaataatatgacatttactgaagaacaaaataataagtatattgttaca
actttaggaaaagttattttcaatggtattttacctaaaacattcccgttcttaaatgaa
ccaacaatgtcaaacttacaaacagttacgccagctaagtactttgttgataaagggaca
aatattaaagaatatttaaaagatgttaaggttgtatctccatttaagaaaaaattctta
ggagatattatctcagaagtcttccgaatctataaaacaactgaaacatcaagaatgtta
gaccgcttaaaagatttaggattcaagtattcgacaattgctggaatttctgtaggggtt
gctgacgtagtcgtatcttctaagaagaaagatttattagcagaaggtgacaaaaaagtt
gctgaaattcatgaattctataatcgtgggttattaacagacgatgaacgttatcgttta
gttattgatgtttgggcaaaagtaaaagatgaaattcaacatgtattaatgaatgagtta
ccagcagataaccacatctacatgatgagtgattctggagcccgtggtaacgcatcgaac
tttacacagttagccggtatgcgtggattaatggccaacccatctggtaaaacaatcgag
ttaccgatcaaatcttcattccgtgaaggtttaacagtaactgagttcttcatctctacc
catggtgcgcgtaaaggattagccgatacagccttaaaaacagccgattcaggttattta
actcgtcgtttagttgacgtagcacaagatgttattgtacgtgaagacgattgtggtaca
gataaaggacaatatattacagaaattaaacaacgtggacaagcagttgagactttattt
gatcgtattgttggacgttatactgcaaaacctgtatatcatccagaaacaggtgcttta
atcatggatcgtaatgaatatatttcagatgatttagctaaagttattgttgaatcaggt
attgaaggaatcgatattcgtacaatttattcatgtaatgcaacaaaaggtgtatgtaaa
aaatgttacggacgtaacttagcaactggtaaagaagtagaagttggggaagctgtaggt
attatggcagctcagtctatcggtgaaccaggtacacagttaacgatgcgtacattccat
acaggtggggttgccggtgccgatattacacaaggtttacctcgtattcaagagttattt
gaagcacgtaatccaaaaggacgtgcaattattgcagagattgatggaactattacaaca
atcaaagcaaatactaaaaaccgttatgaaattacattaacgaataaattagaaagccgt
aactatttattaccatacggtgttcaacctttagtttctgaaggtgatgatgtctttgct
ggggatatgttaacagaaggttcaattgatcctaaagagttattacgtgttaaagacgtt
gaggcagtacaagcctatattttaaaagaggtacaaaatgtataccgtgctcaaggggta
gaattatctgacaaacatatcgagatcatggttcatcaaatgatgaaaaaagttaaggta
attgatggtggagatactgatatcttaccaggatctttaattgatgttacacactataca
cgtgtgaatggtgaagcaattgctcgcggtaaacgtccagcagttggtattccaacaatt
ttaggtatcaccaaagcatctcttgaaactgaatcattcttatctgctgcatcattccag
gaaacaactcgtgtgttaacagatgctgctatcaaaggtaaggttgatgagttagtagga
ttaaaagaaaatgttatcatcggtaagttaattcctgctggaacgggagttttaagagaa
gattatattcaacctgtacataaaaatgtagaggttgaagatgatgatatcttagcattt
gacttagaagatatatcgttaaaatcacctgctagtttaattgaagaagatttagatgat
ttagttgaattagattttgatgaaactgattttattgatgcggaagaagaataa
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