Turicibacter sanguinis: HLK68_05830
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Entry
HLK68_05830 CDS
T06584
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tsg
Turicibacter sanguinis
Pathway
tsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLK68_05830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsg03019
]
HLK68_05830
Messenger RNA biogenesis [BR:
tsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HLK68_05830
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
QJS18802
LinkDB
All DBs
Position
complement(1188835..1190499)
Genome browser
AA seq
554 aa
AA seq
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MEENIKLKVIPLGGLGEIGKNMTAIEYDDEIIVIDCGIAFPDEDMYGVDLIIPEINYLLE
NEDKVKGLFITHGHEDHIGAIPFILKQLNMPIYGTKLTLGLVENKIREHGLLQTTKLHVV
NPRDVIAFNHLSIEFIRTTHSIADACSLAIHTPVGILFHTGDFKVDHTPIDNQPMDLERI
SELAQAGILLLMSDSTNVERKGYTMSEKAIGDTFMKLFDRATGRIIVATFASNIHRMQQI
IDASRAFNRKVAFSGRSMENISKVAMELGYLHIDDDMLININQINTVPENELTLIVTGSQ
GEPMGALARIAFSTHRQLKLQPNDLFIISASPIPGNDKLVGRVINQLYKKGAEVIYKDLE
SVHVSGHACQEELKLILRLTHPKFFMPVHGEYRHLVHHKNLAVSVGIPKDHIKVLETGQI
LELTNNSAKINGRVRTGAILVDGIGVGDVGNIVLRDRKMLAEGGMIIIVATIDKQSKELI
SEPYILTRGFVYVKEAEELMNNIKEIAKNELQMLLENDTNEIMVMKTRVKKSLERYLYEQ
TKRRPSIFPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggaggaaaatataaaattaaaggttattccactcggtggcttaggtgaaatcggtaaa
aacatgactgctattgaatacgatgatgaaattattgtaattgactgtgggattgccttc
cccgatgaagatatgtacggagtagacttaatcattccagaaattaattatctactcgaa
aacgaagacaaagttaaagggctcttcataactcatggtcatgaagatcatatcggagct
atcccattcattctaaaacaacttaacatgccaatttacgggacgaaacttaccttaggt
ttggtggaaaataaaataagagaacatggattactacaaacaactaaacttcacgtcgtc
aatcctcgtgatgttattgcatttaatcatttatccattgaatttattcgaacaactcac
agcatagcagacgcctgttcccttgcaatccataccccagtaggaattctgttccacact
ggagacttcaaagttgatcatactccaattgacaatcaaccaatggatttagaacgcatt
tcagaacttgcacaagccggaattctacttttaatgtcagatagcacaaacgtcgaacgc
aaaggatacaccatgtctgaaaaggcgattggcgataccttcatgaaactatttgatcgt
gcaacaggtcgcattattgtcgctactttcgcttcaaatatccaccgcatgcaacaaatc
atcgatgcatcccgtgcatttaatcgaaaagtagccttcagcggacgtagtatggaaaac
atctctaaagtagcaatggaattaggatatcttcacatagatgacgatatgttgattaat
attaatcagattaatacagtaccagaaaatgaattgaccttaatcgtaactggtagtcaa
ggagaaccaatgggagcacttgcccgtattgccttctctacacatcgtcaacttaaatta
caacctaatgacctattcatcatctcggcttcaccaattccaggtaacgataaactcgtt
ggccgtgtcattaaccaactctataaaaaaggtgcggaagtcatctataaagacttagaa
tcagtccatgtttcaggacatgcttgccaagaagaactaaaacttatcctacgtcttacc
catccaaaattctttatgccggttcatggtgaatatcgtcaccttgtacaccataaaaat
ttagccgtcagtgttggaattccaaaagaccatatcaaagtcttagaaacaggacaaatt
cttgaattaacaaataactcagcaaaaatcaatggccgcgtacgtacaggagccattctt
gtcgatggaattggtgttggagatgtcggaaacatcgtcttaagagaccgcaaaatgctt
gctgaaggtggaatgattatcatcgttgccactattgataaacaatcaaaagaactcatt
agtgagccatacattctaactcgtggctttgtttatgtcaaagaagcagaagaactaatg
aacaatatcaaagaaatcgctaaaaatgagcttcaaatgctactcgaaaacgatacaaac
gaaattatggtcatgaaaactcgcgttaaaaaatcattagaacgttatctatacgaacaa
acaaaaagaagacctagcatcttcccaatcatcatggaagtttaa
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