Thermoanaerobacterium saccharolyticum: Tsac_0742
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Entry
Tsac_0742 CDS
T02137
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsh
Thermoanaerobacterium saccharolyticum
Pathway
tsh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tsac_0742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsh03400
]
Tsac_0742
Enzymes [BR:
tsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tsac_0742
DNA repair and recombination proteins [BR:
tsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tsac_0742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
IstB_IS21
Cas_Csd1
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFK85764
UniProt:
I3VTB9
LinkDB
All DBs
Position
775985..779485
Genome browser
AA seq
1166 aa
AA seq
DB search
MFIKPIENLREVGEINEALTDERLPLLIYGLTDSQKAHIAHYIVKKLGKKVLFITYNDVE
AKLMHEDLSSLLNGDAYLIPSRDALFYKVDASSLDITGKKLAAIRKILDDKPYAFVASID
GVLNKVAPKDVFLKYKRKYKIGDTIDLNELSSFFVTMGYERVPMVEGKGQFSIRGGIIDF
FSPMEEEGFRIELFDDEIDSIRSFDTFTQRSLDNVDEVELFPAREFVLEDENIKKGLSNL
SKRVNSYISKIKETQSGRAEKIKKKFDEIMENISETRNITNIGELIGFFYDNLYSIVDYF
DGAFIIVDENLRVKERASNIVKEFNENFKSLLLSGEVIPDQSNLLFGYDDILKKLSDKSL
ILMNTIVKSDENIQVKKIVNFVSRTMHSFHGKLDLLADDLKFYKSSGYKVVMLSSNLERG
KLLRNSLIGYGLEIPIIEDEEYDIPEGGVLIYPGTISKGFEYVDAKFALISDVEIFGQSR
RSKKSLKVKNSGRIKNFTELTVGSYVVHVNYGIGKYEGIEKITVDGVTKDYLKIKYAGDD
KLFVPVEQLDLVQKYIGPEDKPPKLNKLGSSDWSKLKKRAKKAVEDIAKDLIKLYAKRQT
MKGYAFSKDTPWQKDFEERFPYEETEDQLRCIEEIKKDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAVADGKQVAFLCPTTILAEQHYNNFVQRFKDFPVKIEMLSRFRSNKEQSQIIK
MVADGTVDILVGTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSAT
PIPRTLHMSLVGIRDMSVLENPPEDRYPVQTYVVEFNEDLIRDAILRELGRGGQVYFVYN
RIDGIERMASILKELVPEARIAVAHGQMDEGRLEDIMIGFLNREYDILVCTTIIETGLDI
PNVNTIIVYDSDKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFT
EFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAVGYDMYLRLLDEAIKNLKGISEEDKPNT
AIDIKVSAYIDKEYIEDENQRLEMYKKISSIENEKDVEDIKDELIDRFKEYPKAVEALID
VAYLKALARDANILEITERGNSIILKFKDNKSINSRIVDALVNEFKGKIMFSGQIPPYIT
YKYGKKEDLLKELINLVSKIKCLQIN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttgtttataaagccaatagaaaatttaagagaggttggggaaataaatgaggctcttaca
gacgagagactcccgcttttaatatacggtctaactgattctcaaaaagcacatattgct
cattacattgtaaagaagcttgggaaaaaagtgctttttataacatacaatgatgtggaa
gccaagttgatgcatgaagatttaagttcactgttaaatggcgatgcatatttgattcca
tcaagagatgcacttttttacaaagtggatgcatccagtttagacataactggcaaaaaa
cttgctgctatcaggaaaattcttgatgataagccctatgcatttgtcgcttcaatagat
ggcgttttaaacaaagttgctcctaaagatgtgtttttaaagtacaaaaggaaatacaaa
attggagatacgattgatttaaatgagctttcatcgttttttgtcactatgggatatgaa
agagtgcctatggtggagggcaaagggcagtttagcatacgtggcggtataattgatttt
ttctcgcctatggaagaagaaggttttaggatagagctttttgatgatgaaattgattcc
ataagaagctttgatacattcacgcaaaggtctttggacaatgtagacgaagttgaattg
tttcctgcaagagagtttgttctggaagatgagaacattaaaaaagggctttctaattta
agcaagagggtgaattcctacatttcaaaaataaaagagacacaaagcggcagagcagaa
aagattaagaaaaagtttgacgaaataatggagaatatctctgaaaccagaaatataaca
aatataggagaattgataggctttttttacgacaatctttattctattgttgattatttt
gatggtgcttttataatagtagatgagaatttgagggtgaaagaaagggcctcaaacatc
gttaaggagtttaatgagaattttaagtcgttgcttttatctggagaagtcatacctgat
cagtcgaaccttttgtttggttatgacgacattttaaagaagctttcggataaatcgctg
attttgatgaacacaattgtaaagtctgatgaaaatatacaagtaaaaaaaatcgttaat
tttgtatcaaggacgatgcattcttttcatggaaaattggatcttctggcagatgatctt
aagttctataaaagttctggatataaagttgtcatgctttccagcaatttagagagagga
aaactattgagaaattcacttatagggtatggattagaaattcctatcatagaagacgaa
gagtacgacataccagagggcggtgtgttaatttatccaggcacaataagcaaaggattt
gagtacgtagatgccaaatttgcccttataagcgatgtcgagatttttggccaatcgagg
aggtcgaaaaaatcacttaaagttaaaaatagtggaaggattaagaattttacagaactc
actgttggttcatacgttgtccatgtaaattatggcataggcaaatatgaaggaatcgag
aaaataactgttgatggtgttacgaaagattaccttaagataaaatacgctggcgatgac
aagttgtttgtgcctgttgaacagttggatttggtgcaaaaatacataggtccagaagac
aaaccgccaaaactaaataagttaggcagcagcgattggtctaagcttaagaaaagggct
aaaaaggccgttgaagatatagcgaaggacttgattaagctgtatgcaaaaaggcagaca
atgaagggatatgctttttctaaggatacgccgtggcaaaaagacttcgaagaaaggttt
ccgtacgaggagacggaagatcagcttaggtgcatagaagaaataaaaaaagacatggaa
agcgataaacccatggacagattgctttgcggtgatgtaggatatggaaagacagaagta
gcacttagagccgcatttaaagctgttgcagatggcaagcaggtggcctttttgtgcccg
acgacgatattagccgaacagcactacaataattttgtgcaaaggttcaaagattttcca
gtcaagatcgagatgctttcgcgttttagaagcaataaggagcaatcgcaaataattaaa
atggtagctgatggtactgtagatattctggtggggacacataagattttgcaaaacgat
gtgaagtttaaagaccttggtcttttaatcatagatgaggagcaaagatttggtgtaaag
cataaggagaagattaaaaaactgaaggaaaacatcgatgtgttgtctctttctgcaacg
cctattccaaggacgcttcacatgtcccttgtaggtataagggatatgagcgtattggag
aatcctcctgaagataggtatccagttcaaacgtacgtggtggaatttaatgaagatctc
ataagagatgcgattttaagagagctgggacgtggaggacaagtttactttgtctacaac
agaattgatggcatagaaagaatggcttcgattttaaaagagttggtgcctgaagcacgt
attgctgttgcacatggtcagatggatgaaggaagactggaagatatcatgataggattc
ttaaacagggaatatgacatattagtttgtactacgataattgaaacgggcttggacata
ccaaatgtaaataccataatagtgtatgactcagataagatggggctttctcaattgtac
caattaagaggaagagtcggaagatctaatagattggcttatgcgtattttacttacagg
aaagataaggttattacagaagttgcagaaaaaaggcttgaagcaataaaggagtttact
gaatttggttccgggtttaaaatcgccatgagggatttagagataagaggtgctggtaat
cttttaggagctgagcaacacggtcatatagatgctgtagggtatgatatgtacttgagg
cttctcgacgaggcgatcaaaaacttaaaaggaatatctgaagaagacaagcctaataca
gcaatcgacattaaagttagcgcttatatagataaagagtacattgaagatgaaaatcaa
aggcttgaaatgtataaaaagatttcttccatcgaaaatgaaaaagatgttgaagacata
aaggatgagcttatagacaggtttaaagagtacccaaaagctgtagaagctctcatcgat
gtggcttatttaaaagcgctggcaagagatgcaaatatattggaaattactgaaagaggt
aattctataatcttgaagtttaaggacaacaagtccataaattcaagaatagttgatgcc
ttagtcaatgaatttaaaggtaaaataatgttttcgggccaaattccaccatacatcact
tataagtacggcaaaaaggaagacttattgaaggaattgatcaatttggtcagcaagatt
aaatgtttgcagataaattaa
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integrated database retrieval system
