Thermoanaerobacterium saccharolyticum: Tsac_1004
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Entry
Tsac_1004 CDS
T02137
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsh
Thermoanaerobacterium saccharolyticum
Pathway
tsh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tsac_1004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsh03021
]
Tsac_1004
03400 DNA repair and recombination proteins [BR:
tsh03400
]
Tsac_1004
Enzymes [BR:
tsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tsac_1004
Transcription machinery [BR:
tsh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tsac_1004
DNA repair and recombination proteins [BR:
tsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tsac_1004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFK86020
UniProt:
I3VU25
LinkDB
All DBs
Position
1051400..1054954
Genome browser
AA seq
1184 aa
AA seq
DB search
MFELKNFDSMKIGLASPEKIREWSRGEVKKPETINYRTLKPEREGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVICDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVIDPGETNLSKKQLLSEKEYREYLDKYGNKFKAGMGAESIKELLQ
EIDLEKLSKELKAEIRESTGQKRVRAIRRLEVVQAFLDSGNKPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLYQCGLPKE
MALELFKPFVMKRLVDKGIAQHIKSAKRMVEKVRPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLTVEAQAEARFLMLAANNIL
KPQDGKPVMTPTQDMVLGCYYLTGDEDGVLGEGRLFKDYEEALMAYQLGQINIHAKIKVR
MKREVNGEVKTKVIETTIGKLIFNSAIPQDLGFVDRTNPDTMFDLEVSTLVDKSKLGKIL
DRVYRVHGPTKTAETLDKIKALGYQYSTKAALTVSVSDMVIPEEKKTLLNEADEAVKKID
AQFRRGLISEEERYESVIRTWNMTTEKVSDALMANLDRFNPIFMMAHSGARGSKNQIKQL
AGMRGLMANPAGRIIELPIRSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIIREDDCGTDEGIYVTEIKEGNEVIEKLADRLSGRVSLEDIKDPTTGEIIVKK
NTMISEEDAEKIEELGIKKVKIRSLLTCKSKHGVCRMCYGRNLATGSQVEIGEAVGIIAA
QAIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAVISEIPGVVKINETK
KKREVVITDNENNISKTYLIPYGSRLKVQDGQYIEAGDELTEGSVNPHDILKIKGLFAVQ
TYLLQEVQKVYRLQGVEINDKHIEVIIRQMMRKIKIEDSGDTSMMPGELVDMFAFEEENR
KAVEKGLRPASGTRALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKEN
VIIGKLIPAGTGLSRYRNIVVKTAGQSESEGNAAESDNVEANAK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagcttaagaattttgattcaatgaaaataggacttgcttcacctgaaaagata
agggaatggtcaagaggtgaagtaaaaaaacctgagactataaattacagaactttaaag
ccagaaagagaaggtctgttttgtgaaaagatatttggacctacaaaggattgggaatgt
cactgtggaaagtataaaagagtaaggtacaaaggcgttatatgcgatagatgtggtgtt
gaagtcacaaggtcgaaagttagacgtgaaaggatggggcatattgagcttgctgcccca
gtttcccatatatggtatttcaagggtataccaagccgcatgggattaatacttgacatg
tccccaagagcccttgaaaaagttttgtattttgcgtcttacgtcgtaatagatcctggc
gagactaacctttccaagaagcagcttttaagcgagaaagagtatagagagtatttagat
aaatacggcaacaagtttaaggcaggcatgggtgctgaatcaataaaagagcttctgcag
gaaatagatcttgagaagttgtcgaaagagttaaaggctgaaattagggagtcaacaggg
caaaagcgtgtaagggccataagaaggttagaagttgttcaggcgtttttggattcaggc
aataagcctgaatggatgatacttgacgtgatacctgtaattccgcctgatttaaggcca
atggttcaattggatggtggaaggtttgcaacgtcggatttgaacgatctatatagaagg
gttataaatagaaacaatagattgaaaagacttctcgacttaggtgctcctgacatcata
gtcagaaatgagaagagaatgttgcaggaagctgttgatgcccttattgataatggcaga
agaggaaggccggttacaggtcctggcaataggccactgaagtctttgtctgatatgcta
aaaggtaagcaaggaagatttaggcagaacttgttaggtaagagggtagactattctggc
cgttctgttatagtagttggtcctgaattaaagctttatcagtgcggtcttcctaaagag
atggctcttgagcttttcaagccttttgtgatgaaaaggcttgttgacaaagggatagcg
cagcatataaagagtgctaaaagaatggtggaaaaggtgcgcccagaagtttgggatgta
ttagaagatgtaatcaaagaacatccagttcttttaaacagagcacctacactgcaccgt
ttaggcatacaggcatttgaacctgtgttggtagaaggcagggctataaagcttcatccg
ttagtatgtacggcttacaacgctgactttgatggagaccagatggcagtccatgttcct
ttgactgtagaggcgcaagcagaagcgagatttttaatgctggctgctaacaacatatta
aagccacaggatggaaagcctgtcatgacacctacgcaggatatggttttggggtgctac
tatttgacaggcgatgaagacggcgtcttaggtgaaggtaggttatttaaagactatgaa
gaagctcttatggcgtatcaattaggccaaataaatattcatgccaagataaaagtgaga
atgaagagagaggtaaatggtgaggttaaaactaaagtcatcgagacaactataggaaag
cttatatttaattcggccatacctcaagatttaggctttgtagataggacaaatcctgat
acaatgtttgatctggaggtatctacattagtagataagtcaaaattaggcaagatattg
gacagagtatatagagtgcatgggcctacaaagaccgctgaaaccttagacaaaataaag
gctttaggctatcaatattctactaaagctgcattgactgtcagcgtttctgatatggta
atacctgaagagaagaagaccctcttaaatgaagctgatgaagcagttaagaaaatagat
gctcagtttagacgtggtctcatttcggaagaagaaaggtatgaaagcgtcattagaacg
tggaacatgacgacagaaaaagtaagcgatgccctcatggctaatcttgatagattcaat
cctatatttatgatggctcattcaggtgcaagaggcagtaaaaaccagataaagcagtta
gctggtatgagaggattgatggctaaccctgcaggtaggataattgagcttcctataaga
tctaatttcagagaaggacttaatgtcttggaattcttcatttctactcacggcgccaga
aagggtttggctgatacagctttaagaactgccgactcaggctatttaacccgtaggctt
gtagatgtaagccaggatgttataatcagagaagatgattgcggcacagatgaaggaatt
tacgtaaccgagattaaagaaggcaacgaagtaatagaaaagcttgcagatagattaagt
ggaagagtatcactggaggacataaaagatcctactacaggcgaaataatagtaaagaaa
aatacgatgatttctgaagaagatgcagagaagattgaagaattaggtatcaagaaggtc
aaaataagatctctcttgacatgcaaatcaaagcatggcgtctgccggatgtgctatgga
aggaacttggctactggttcacaagttgaaattggtgaggctgtgggaataatcgcagcg
caggccataggagaacctggtacacagcttacaatgagaactttccatactggcggtgtt
gctggtgctgatataacacaaggtctgccgagggttgaggagctgtttgaagcgagaaaa
ccaaagggattagctgttatatctgagataccaggcgttgtaaagataaatgaaactaaa
aagaagagagaagttgtaataactgacaacgaaaataatatttcaaagacatatcttata
ccttacggctcaaggcttaaagttcaggatggccagtatatcgaagcaggtgacgagctt
acagaaggatctgtaaatccgcacgacatattaaagataaaagggctatttgcagtacaa
acttatttactgcaggaagttcaaaaggtatacaggctgcaaggtgttgaaataaacgac
aagcacatagaggtaataatacgtcaaatgatgagaaagattaagattgaagattccgga
gacacatcaatgatgcctggagaactggtagatatgtttgcctttgaagaagaaaataga
aaagctgtggagaaaggtttaaggccagcttcaggaacgagagcccttttaggaatcaca
aaagctgcccttgctacagattcattcttatctgctgcatcattccaagagacaaccaga
gttttgactgatgcggctataaaaggaaaggtcgatcctttgataggccttaaggaaaat
gtcataataggtaaactgattccggcaggaacaggtttgtcaaggtatagaaatattgtc
gttaagactgcaggtcaatcagaaagtgaaggaaatgctgctgaaagtgataatgtggag
gcaaatgcaaaataa
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