Thermoanaerobacterium saccharolyticum: Tsac_2282
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Entry
Tsac_2282 CDS
T02137
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tsh
Thermoanaerobacterium saccharolyticum
Pathway
tsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tsac_2282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsh03019
]
Tsac_2282
03400 DNA repair and recombination proteins [BR:
tsh03400
]
Tsac_2282
Enzymes [BR:
tsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tsac_2282
Messenger RNA biogenesis [BR:
tsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tsac_2282
DNA repair and recombination proteins [BR:
tsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Tsac_2282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFK87286
UniProt:
I3VXP1
LinkDB
All DBs
Position
complement(2338260..2341436)
Genome browser
AA seq
1058 aa
AA seq
DB search
MINLKDLISEIIQSYLKDDETIIVLKGFSIKLYDNNITIDIDDILKNDKLKYFNLINERR
VITYEEYLILYSFIIYKFKKITILENNIYINYFPLYVDIPEYIKKSLLINFDEDNESDEE
IGNLSDYIAIYSNFKYINGKYYVVYNNIISDEKEEKYPVFTKADTKIEKEVVTSLDKCYK
LDTEESYVTFLDDIIEGKVKDIHILGDWHNAYNSYLDKLQILKNIYESDIDIKIGYVKDR
ERPVTVRKEYYEILKKYWGKDAFRKIKMYDIDRLYIKEKVVKSVSQGEIIERIVEEVEKC
YRGENYRDIFVTAPTGSGKSAMFQIPAIYLAEKYELFTIVISPLIGLMNDQVYNLDKKNY
KYARTINSDISPIKRQEIMNEIADKKCHILYLSPESLLSKSDLEQIIGDRQLGLLVIDEA
HIVTTWGKQFRPDYWYLGDHLDRIKKYQRKNGKPNFVIATFTATAIYGGMEDMYDETIQS
LKMLDPITYLGYVKRNDIKINIEKSEVTITQKDEYELNKFDKLIEKMNKSLTLGQKMLIY
FPTIALINRFYEYCIVNNLGKYITKYHGRLTPYEKRENYTKFKENKTPVMLATKAFGMGI
DIDDIDIIAHFAPTGNVCDYVQEIGRAARKLEMIGEAYYNFMRNDFKHINKLHGLSTVKE
YQLINVIKKVYELYLQNIKNNFNKKLTKRRNAMLVDAESFQHIFENPFFDEEDGINKVKT
AMLLIQKDFERRFAFSPFNIRPIPLFEIGYFKIDPKIQKAIIEEYGDVLHEEYDYPDICS
VNLKKIWEENFYEKYSFPKFKYMLYSRDHELDFEHKNEMRHALCVEIYFKDSNYLNMYNK
YINAVKDIIYNSVRESKYYKIDGKGGLVDLLMTKIGNNEYKAKSIVESIISSMSIFQRDY
NKNIHSRIYTVKPLKTGEIEYRFMSGVAEYFRWIDRTFNYIINNVDEGKIYLVDDIENGN
IKEMMLILGLMESLDLLIFKALGGKNSQIYIYVNQTKTMKEIIEKPYRYKNKLLEIIGER
HKISVAMLTYLFDGNFSSEEFWDLIEDYFLGILPKEIM
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
ttgataaacttaaaagatcttataagcgaaataatacaaagctatttaaaagatgatgaa
actattatagtcttaaagggatttagtataaaattgtacgataataacatcacaatagac
attgatgacatattaaaaaatgataaactaaaatacttcaatctaataaatgaaagacga
gtaattacttatgaggaatatttaatcctctattcgtttataatatataaattcaaaaaa
ataacaattcttgaaaataatatatacataaactactttcctttatacgttgatattccg
gaatatataaaaaaatctttgctgattaactttgatgaggataatgaatcagatgaagaa
atcggcaatttatcagattatatagcaatatatagtaattttaaatatatcaatggtaaa
tattatgtcgtatacaataatataatttctgatgagaaagaagaaaaatatccagtattt
acaaaggctgatacaaaaattgaaaaggaggttgtgacgtctttagataaatgctacaag
ttggatactgaagagagctacgtgacttttttagacgacatcatagaaggaaaagtaaaa
gatatacatatattgggggactggcacaacgcttataattcatatttagataagcttcag
attttaaaaaacatatatgaaagtgacatagatattaaaattgggtatgttaaagatagg
gaaagaccggtaacagtcagaaaagaatactatgaaatattgaaaaaatattgggggaaa
gatgcatttagaaaaattaaaatgtatgacattgatagattatatattaaagaaaaagtc
gtaaaaagtgtatcacaaggtgaaataattgaaagaatagttgaagaagttgaaaaatgc
tatagaggggaaaattatagagacatttttgtaactgcacctactggttcaggaaaatct
gctatgttccagattcctgctatctatttagcagaaaaatatgaactttttactatagtg
atttcaccactgataggtcttatgaatgatcaagtttataatctagataagaaaaattac
aaatatgcaaggacaataaattcagacatatcacctataaaaaggcaggaaattatgaat
gaaattgccgataaaaagtgccatatattgtatctttcgcctgagtcgcttctcagcaaa
agtgatttagaacagataataggagatcgtcagttaggtctattagtaatagatgaagcc
cacatagttacaacgtggggcaagcaatttagacctgattattggtatttgggggatcat
ttagatagaataaaaaagtatcaacgcaaaaatggcaaaccaaactttgtaatagctaca
tttactgcaactgctatttatggcggtatggaagatatgtatgatgagactatacaaagc
cttaaaatgttagatcctattacttacctgggctacgttaaaagaaatgatataaaaata
aatatagagaaatctgaagtaacaattactcaaaaagatgagtatgaattaaataaattt
gataaacttatagagaaaatgaataaatcattgacactgggacaaaaaatgcttatatat
tttccgacgatagcgctgataaatagattttatgagtactgtatagttaacaatctaggg
aaatacattaccaaatatcatggcaggctcactccatacgaaaaaagggagaattatact
aaatttaaagagaataagactcctgtaatgttagcaacaaaagcatttggcatggggatt
gacattgacgatattgatataattgcccactttgcaccaacaggcaatgtatgcgattat
gtgcaggaaataggtagagctgctcgaaagcttgaaatgattggagaagcatattacaat
tttatgagaaatgattttaagcatataaataaattgcacggcttatcaactgtaaaagag
tatcaactaattaacgtcataaaaaaagtatatgaactttatctgcaaaatataaaaaat
aatttcaataaaaaattgacaaaaagaagaaatgctatgctggtagatgcagagtctttt
cagcatatatttgagaatccattttttgatgaggaagatggaataaacaaagtaaagact
gcaatgctattaatacaaaaagatttcgaaagaagatttgcattttcaccttttaatatt
agacctataccattatttgaaataggatattttaagatagatcccaaaatacaaaaggct
ataattgaagaatatggtgatgtattgcatgaagaatacgattatcctgatatttgctct
gtcaatttaaaaaagatatgggaagaaaatttttatgagaaatattcatttccaaagttt
aaatatatgctttattcaagggatcatgagctagactttgaacataagaacgaaatgcgg
catgcactgtgtgtcgaaatatatttcaaagatagtaattatttaaatatgtacaacaaa
tatataaatgctgtaaaagatattatatataattctgtaagggaatcaaaatattacaag
atagatggtaaaggcgggttggtcgacttattgatgacaaagattggcaacaatgaatat
aaagcaaaaagcatagttgaatctattatttcttctatgtctattttccaaagggattac
aataaaaatatacatagtagaatttatacggttaaaccattaaagactggagaaattgaa
tacagatttatgagcggtgttgcagagtactttagatggattgatagaacatttaactat
ataataaacaatgttgatgaagggaaaatatatttggttgacgacatcgagaatggtaat
ataaaagaaatgatgcttattttaggattgatggaatctttagatttattgatatttaaa
gcattgggtgggaaaaacagccagatatatatttatgtaaatcaaactaaaacgatgaaa
gaaataatagagaaaccctataggtataaaaataagctattagagataataggggaaagg
cataaaatatcagttgcaatgcttacttatctttttgatggaaatttcagcagcgaagaa
ttttgggatcttatagaagattactttttgggtatattaccaaaagagataatgtga
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