Thermococcus sibiricus: TSIB_0521
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Entry
TSIB_0521 CDS
T00928
Name
(GenBank) CDC48/VCP like protein, AAA superfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tsi
Thermococcus sibiricus
Pathway
tsi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
TSIB_0521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsi03019
]
TSIB_0521
03009 Ribosome biogenesis [BR:
tsi03009
]
TSIB_0521
04131 Membrane trafficking [BR:
tsi04131
]
TSIB_0521
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsi04147
]
TSIB_0521
Messenger RNA biogenesis [BR:
tsi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
TSIB_0521
Ribosome biogenesis [BR:
tsi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
TSIB_0521
Membrane trafficking [BR:
tsi04131
]
SNARE
SNARE associated proteins
Others
TSIB_0521
Autophagy
Aggrephagy
Other aggrephagy associated proteins
TSIB_0521
Exosome [BR:
tsi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TSIB_0521
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
AAA_16
CDC48_2
RuvB_N
AAA_2
AAA_22
AAA_14
AAA_5
TIP49
AAA_33
Vps4_C
nSTAND3
RNA_helicase
AAA_28
AAA_24
IstB_IS21
Mg_chelatase
Sigma54_activat
NPHP3_N
DUF815
AAA_18
AAA_7
ABC_tran
Bac_DnaA
Parvo_NS1
nSTAND_NTPase5
ATPase_2
AAA_lid_PRS2_C
AAA_25
TsaE
NB-ARC
SLFN-g3_helicase
PhoH
AAA_3
ATPase
DUF5906
Zot
Motif
Other DBs
NCBI-ProteinID:
ACS89587
UniProt:
C6A1U2
LinkDB
All DBs
Position
488005..490437
Genome browser
AA seq
810 aa
AA seq
DB search
MADKNEIKLKVASAYQRDVGRGIVRVDRNAMRKIGVQTGDIVEIIGTKNTAAVVWPAYPE
DEGLEIIRMDGTIRKNAGVGLGDEVTIRKAEVKEAQKVVLAPTEPIRFGHDFVDWLHSRL
VGRPVVRGDYIRIGVLGQELTFVVTATTPSGVVQITEFTEFTVSEKTVKEVTKTPALGVT
YEDIGGLKDAIQKIREMIELPLKHPEVFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA
NAHFIAINGPEIMSKYYGESEERLREVFKESEENAPSIIFIDEIDAIAPKRGEVTGEVEK
RVVAQLLTLMDGLKSRGKVIVIGATNRPDALDPALRRPGRFDREIEIGVPDKQGRKEILQ
IHTRGMPIEPDFRKEEVKKVLKELKQDDRFRDAAERALYKIEDLADKEEIIRRAIRDIDD
KLYEEVKHRLIDLLLEELAEKTHGFVGADLAALAREAAMAALRRLIEEGKIDFEAESIPK
EVLEELKVTRRDFYEALKMVEPSALREVLLEIPNVRWNDIGGLEEVKQQLREAVEWPLKY
PEAFMAMGINPPKGILLYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNI
REIFRKARQAAPTVIFIDEIDAIAPRRGSDVNRVTDRLINQLLTEMDGIEENSGVVVIAA
TNRPDILDPALLRPGRFDRIILVPAPDVKARLEIFKVHTRNVPLAKDVNLEELAKRTEGY
TGADIEAVVREAAFNTMRRAISEGIIKPGTRASDIRERVKVTMRDFEEAMKKVGPSVSEE
TMEYYKRIEEMFIKKKSEVKPTEGRDRTIL
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaaaatgaaatcaagcttaaagtcgcttccgcttaccagagagatgttggt
agggggatagtcagggttgatagaaatgcaatgaggaaaatcggtgtccagacaggggat
attgtagaaattattggtactaaaaacacggctgcggtagtttggccagcttatccagag
gatgagggattagaaattatccgaatggatggcacgataagaaagaatgctggtgttggt
cttggagatgaggtaaccataagaaaagcagaagttaaagaggcccaaaaagtagtttta
gccccaacagagccgattagatttggccatgattttgttgattggctccattcaaggtta
gtgggtaggccagtagttaggggagattacattaggattggtgtcctcgggcaagaactc
acttttgtagtcactgcaactaccccttcgggggttgttcagataacagaattcacagag
ttcacggtctcagagaaaacggttaaggaagtgactaagactccagctcttggagtcacc
tatgaagacattggtggcctgaaggatgcaattcagaagattagagaaatgatagaactt
ccattgaagcatccagaagtatttgagaagcttggcattgaaccgcctaagggtgttttg
ctttacggacctcctggtactggaaagactttattagctaaggccgttgctaatgaagct
aacgctcattttattgcaattaacgggccagaaatcatgagtaagtattatggagaaagc
gaagagagacttagggaggtattcaaggaatcggaagagaacgctccaagtattatattc
atcgacgagatcgacgctatagctccaaagagaggagaagttactggagaagttgagaaa
agagtagtagctcagctattaaccttaatggatggtctaaaaagcagaggaaaagtgata
gtcataggtgcaactaaccggcctgatgctttagatcctgcccttagaagaccaggtagg
tttgatagagagatagaaataggagttccagacaaacagggaagaaaagagatcctccaa
attcacacaaggggaatgcctattgagccggatttcagaaaagaggaagttaaaaaagtc
cttaaggaacttaaacaagacgatagatttagagatgctgctgaaagagctctttataag
atagaagatcttgctgacaaggaagagattatcagaagagccataagagatatcgatgat
aaactttacgaagaagtgaagcataggttgattgatcttctccttgaagaacttgcagag
aagactcatggatttgttggagctgatttggcagcattggcaagagaggcagcaatggct
gctttaaggaggttgattgaagaaggcaagatagactttgaagcagaaagcattccaaaa
gaagtgcttgaagagctcaaagtaaccagaagggacttttacgaagcattgaagatggtt
gaaccatccgcccttagagaagtgcttcttgagattcccaatgttagatggaatgatatt
ggaggccttgaagaggttaaacagcaattaagagaagctgtggaatggccacttaaatat
ccagaggcatttatggctatgggtattaatccacccaagggaatactcctatatggccca
ccgggtactggaaagactttactagcaaaggccgttgctactgaaagtgaagctaatttc
attggtattagaggtccagaagtactcagcaagtgggtgggagagagtgagaaaaacata
agggaaatatttagaaaagcaaggcaagcagctcctacagtaatctttattgatgagatt
gatgctatagccccaagaagagggagtgatgtcaaccgagttacggacagacttatcaac
caactcctcacagaaatggatggtattgaggagaatagtggtgtggttgttattgcagct
acaaatagaccagatattctagatccagcattactaaggcctggaagatttgataggata
atcctagttccagcaccagatgtaaaagcaagattggaaatattcaaagtacatacgaga
aacgttccactagctaaagatgttaacttagaagagcttgcaaagaggactgagggatat
acaggggcagatattgaagcagtagtcagagaggccgcatttaataccatgagaagagcc
ataagtgaaggaataataaaaccaggtacgagggcaagtgacattagggaaagagttaag
gttacaatgagggattttgaggaagctatgaagaaagtaggtccaagtgtaagcgaggaa
actatggaatattacaagagaattgaggagatgttcattaaaaagaaatctgaagtaaaa
ccaacagaggggagagatagaacaatcttgtga
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